Two-stage Off-Gel isoelectric focusing: protein followed by peptide fractionation and application to proteome analysis of human plasma

This paper presents the recently introduced Off-Gel electrophoresis (OGE) technology as a versatile tool to reproducibly fractionate intact proteins and peptides into discrete liquid fractions. The coupling of two stages of OGE, i.e., the separation of intact proteins in a first-stage followed by fractionation of peptides derived from each protein fraction after proteolysis in a second stage, results in an array of 15 x 15 fractions that are directly amenable to additional peptide fractionation like reverse-phase liquid chromatography (RPC). The analysis of all second-stage peptide fractions from only the first-stage protein fraction representing pH 5.0 -5.15 by on-line reverse-phase LC-tandem mass spectrometry resulted in the identification of 53 proteins (337 peptides), of which 10 were on different immunoglobulin (Ig) chains, with an input of only 1.5 mg human blood plasma proteins. Increasing the protein load to approximately 12 mg increased the number of identified proteins in the same protein fraction to 73 proteins (449 peptides), of which 15 were Ig-related. Immunodepletion of six of the most abundant proteins (albumin, transferrin, haptoglobin, IgG, IgA, and alpha-1-antitrypsin) prior to first-stage OGE with an input of 1.5 mg of protein (equivalent to approximately 10 mg nondepleted plasma) resulted in the identification of 81 proteins (660 peptides), of which three were still Ig fragments. The pI-based separation of peptides appears to be nonuniform based on the theoretically determined pI values of identified peptides. This observation specifically accounts for the neutral zone (pI 5-8) and can be accounted for by the physicochemical properties of the peptides given by their amino acid composition. The power of OGE separation of proteins and peptides is discussed with a focus on the use of the knowledge about the pI of proteins and peptides that assist the validation of correct identifications together with the retention time of peptides on RPC.     

Electronic shells and shells of atoms in metallic clusters

Intensity anomalies (magic numbers) have been observed in the mass spectra of sodium clusters containing up to 22 000 atoms. For small clusters (Na _n ,n≤1500) the anomalies appear to be due to the filling of electronic shells (groups of subshells having the same energy). The shells can be characterized rather well by a pseudoquantum-number, indicating the possible existence of a symmetry higher than spherical. The mass spectra of larger clusters (1500≤n≤22 000) are well explained by the completion of icosahedral or cuboctahedral shells of atoms. The fact that the two types of shells (electron and atom) occur in distinct and non-overlapping size intervals might indicate the existence of a “liquid” to “solid” transition in going from small to large clusters.     

Optisch aktive übergangsmetall-komplexe : LXVIII. Darstellung,epimerisierung, röntgenstrukturanalyse und absolute konfiguration von (-)546-C7H7Mo(CO)(PN★)I

C₇H₇Mo(CO)(PN^★)I (I) (PN^★  (S)(+)-(C₆H₅)₂PN(CH₃)CH(CH₃)(C₆H₅)) is prepared in 90% yield by reaction of C₇H₇Mo(CO)₂I and PN^★. The two diastereo-isomers Ia and Ib differing only in the Mo-configuration exhibit chemical shift differences of their C₇H₇ and CH₃ signals. Ia and Ib can be separated by fractional crystallization. In solution Ia epimerizes with respect to the Mo configuration. The half lives in benzene for the equilibration Ia ? Ib are 5.5, 30, and 104 min at 60, 50, and 40°C, respectively. Phosphine exchange experiments show that the epimerization proceeds via PN^★ dissociation.An X-ray structure analysis was carried out on a single crystal of Ia. The absolute configuration at Mo was determined to be (R).     

Phosphaalkynes—Syntheses,Reactions, Coordination Behavior [New Synthetic Methods (73)]

Organophosphorus compounds have been applied in two ways in chemical synthesis. They can either be used as a reagent in a step of the synthesis (for example, in the Wittig reaction) or they can be incorporated directly into the target molecule. This second application, in particular, has expanded greatly in the last few years with the preparation of low-coordination phosphorus compounds. These include the phosphaalkynes, which are of great interest to organic and inorganic chemists. Phosphaalkynes have been employed in the synthesis of heterocyclic compounds, phosphaarenes and their valence isomers, and polycyclic compounds. Further applications have been the use of phosphaalkynes as new ligand systems in complex chemistry and their cyclooligomerization with organometallic reagents. While the chemical properties of phosphaalkynes have little in common with those of nitriles, they are in many ways very similar to those of the isoelectronic acetylenes.     

Trimethylsilylcyanid als Umpolungsreagens,VI. Anionische 1,4- O→C-Silylgruppen-Umlagerung

Trimethylsilyl Cyanide — A Reagent for Umpolung, VI. Anionic 1,4-O→C-Silyl Group Rearrangement The adducts 6 from substituted acroleins 5a – f and trimethylsilyl cyanide form the anions 6 _A on deprotonation at −78°C, which are silylated by trimethylsilyl chloride to 7 or (and) 8 in positions 3 or (and) 1. On warming up to room temperature, 6a _A and 6b _A undergo smoothly 1,4-O→C-silyl group rearrangements to form 13a _A and 13b _A which can be trapped by silylation. 6c – d _A decompose on warming up. Triethylsilyl instead of trimethylsilyl groups decelerate the rearrangement appreciably. Structure and configuration of the different products are determined.     

On the Existence and Hydrolytic Stability of Titanosiloxane Bonds in the System: Glycidoxypropyltrimethoxysilane-Water-Titaniumtetraethoxide

Heterometal materials based on glycidoxypropyltrialkoxysilane and titaniumalkoxide are used for optical applications and require a high homogeneity on the molecular level. The presence of heterometal titanosiloxanes, their distribution and hydrolytic stability should influence the homogeneity of these materials. 29Si and 17O NMR spectroscopy has been used to investigate sols with molar ratios Si : Ti = 1 and H2O : OR (H) = 0.5 – 2.0 and their gels after heat treatment at 130°C. The presence of Si—O—Ti bonds in sols with a low water content (H < 0.2) and in the corresponding gels was identified by the high-field shift of the 29Si NMR signals of T1 and T2 units of up to 2–3 ppm compared to corresponding signals of homo-condensed Si—O—Si bonds. The existence of Si—O—Ti bonds in the sols is supported by 17O NMR spectra which show a characteristic signal around 340 ppm. A cleavage of the Si—O—Ti bonds occurs with increasing water/OR ratio in the sols. The cleavage of the heterometal bonds and the building up of homo-condensed species leads to a separation into areas with predominantly Ti—O—Ti and Si—O—Si bonds resulting in a decreased molecular homogeneity of the materials.     

Metallcarbonyl-Synthesen,XIV. Neuartige Vanadium-, Niob- und Tantal-Komplexe mit Wasserstoff-Brücken

Syntheses of Metal Carbonyls, XIV. Novel Vanadium, Niobium, and Tantalum Complexes Having Hydrido Bridges The novel homo- and heterodinuclear organometallic μ-hydrido compounds 3a – c of vanadium, niobium, and tantalum have been synthesized by light-induced reactions of the hydridoniobium complex (η⁵-C₅H₅)₂NbH₃ ( 1 ) with the half-sandwich complexes (η⁵-C₅H₅)M(CO)₄ ( 2a : M = V; 2b : M = Nb; 2c : M = Ta). These compounds have the general composition L_xM – H – Nb(CO)(η⁵-C₅H₅)₂. The formation of the M – H – Nb moieties is a dark-reaction preceded by two photoreactions that are independent from each other elimination of CO from 2a – c and elimination of H₂ from 1 , with the extruded carbon monoxide being transfered to the (η⁵-C₅H₅)₂NbH fragment; subsequent fixation of the species (η⁵-C₅H₅)₂Nb(CO)H thus generated to the photogragments (η⁵-C₅H₅)M(CO)₃ results in donor stabilization of these latter groups. The structural architecture of the derivatives 3a und b was established by X-Ray diffraction. The hydrogen bridges are to be considered as three-center two-electron functions that are responsible for a serious lengthening of the otherwise by at least 40 pm shorter metal-to-metal distances amounting to 371.3 pm in 3a and 373.3 pm in 3b (mean values).     

Advances in Organophosphorus Chemistry Based on Dichloro(methyl)phosphane

Besides phosphorus trichloride and phosphane, dichloro(methyl)phosphane is gaining importance as a starting material for the synthesis of organophosphorus compounds. It provides ready access to phosphonic, phosphinic and phosphonous acid derivatives, as well as their secondary products. The synthetic and application potential of organophosphorus compounds—based on industrially produced dichloro(methyl)phosphane—is illustrated by means of numerous examples.     

Pyrimidine acyclo-C-nucleosides by ring transformations of 2-formyl-L-arabinal

The protected 2-formyl-L-arabinal 2 reacted with thiourea and cyanamide in the presence of sodium hydride to afford via ring transformations the 5-[1R,2S-1,2- bis(benzyloxy)-3-hydroxypropyl]-1,2-dihydropyrimidines 3 and 4, respectively. Similarly, treatment of 2 with 3-amino-2H-1,2,4-triazole yielded 6-[1R,2S-1,2- bis(benzyloxy)-3-hydroxypropyl][1,2,4]-triazolo[1,5-a]pyrimidine (5).     

Two New Spermidine Alkaloids from Chisocheton weinlandii

The investigation of the MeOH extract of the leaves of Chisocheton weinlandii Harms (Meliaceae) revealed two new open‐chain spermidine alkaloids, chisitine 1 ( 1 ) and chisitine 2 ( 2 ). Their structures were elucidated by NMR spectroscopy, tandem‐mass spectrometry, and independant syntheses (Scheme 3). Detailed MS/MS fragmentation pathways are discussed for both compounds based on H/D exchange and ¹⁸O‐labeling experiments (Schemes 1 and 2).