Transannular distance dependence of stabilization energy of the intramolecular dimer radical cation of cyclophanes

The intramolecular dimer radical cation and charge-transfer complex of various cyclophanes were investigated by using pulse radiolysis measurements. The charge resonance band due to the dimer radical cation of cyclophanes appeared in the near-IR region, which showed a blue-shift as the distance between the two benzene rings of cyclophane decreased. The stabilization energy of the dimer radical cation, which was estimated from the peak position of the charge resonance band, was explained by the exchange interaction, while the substituent effect was small. The absorption peak of the charge-transfer complex with chlorine atom also showed the shift in accordance with the oxidation potential of cyclophanes.     

S-S bond mesolysis in alpha,alpha'-dinaphthyl disulfide radical anion generated during gamma-radiolysis and pulse radiolysis in organic solution

A dissociation mechanism of the S-S bond in the alpha,alpha'-dinaphthyl disulfide radical anion (NpSSNp*-) in organic solution was investigated on the basis of transient absorption measurements and DFT calculations. NpSSNp*- generated during gamma-radiolysis of NpSSNp in MTHF at 77 K showed the absorption band at 430 nm, which shifted to 560 nm with an increase of the ambient temperature up to room temperature. With the aid of DFT calculations at the B3LYP/6-31G(d) level, the shift of the absorption band was interpreted in terms of molecular conformational changes of NpSSNp*- due to the elongation of the S-S bond. It was observed that NpSSNp*- dissociates into naphthylthiyl radical and thionaphtholate anion in organic solution with a first-order rate constant in the magnitude of 10(6) s-1. From Arrhenius plots of the decay rate constants of NpSSNp*- in a temperature range of 160-293 K, an activation energy for the S-S bond cleavage in NpSSNp*- in solution was determined along with a frequency factor. Based on the state energies of NpSSNp*- calculated at the B3LYP/6-31G(d) level, a Morse-like energy potential for the S-S bond cleavage of NpSSNp*- is depicted as a function of the S-S bond distance.     

Detection of the G-quadruplex-TMPyP4 complex by 2-aminopurine modified human telomeric DNA

2-Aminopurine (Ap) modified human telomere sequences were used to monitor the specific complex formation of the G-quadruplex and 5,10,15,20-tetrakis(N-methyl-4-pyridyl)porphyrin (TMPyP4).     

Pd(OAc)2-catalyzed carbonylation of amines

A phosphine-free catalytic system [Pd(OAc)2-Cu(OAc)2-air] induced a substrate-specific carbonylation of amines in boiling toluene under CO gas (1 atm). Symmetrical N,N'-dialkylureas were obtained by the carbonylation of primary amines. N,N,N'-Trialkylureas were selectively formed by addition of a secondary amine to the above reaction vessel. Secondary amines did not give tetraalkylureas. However, dialkylamines with a phenyl group on their alkyl chains, such as N-monoalkylated benzylic amine or phenethylamine derivatives, underwent a direct aromatic carbonylation to afford five- or six-membered benzolactams. In the carbonylation, the chelation effect or steric repulsion between Pd(II) and the meta-substituent in the ortho-palladation and the ring sizes of cyclopalladation products that were formed prior to carbonylation were found to generate good site selectivity and increase the reaction rate. In contrast, carbonylation of omega-arylalkylamines with a hydroxyl group gave neither ureas nor benzolactams but instead produced 1,3-oxazolidinones smoothly. Hydrochlorides of amines also underwent carbonylation to afford the corresponding amides under the conditions used. This procedure made it possible to prepare ureas of amino acid esters and N-alkylcarbamates in practical yields.     

Detection of the local structural changes in the dimer interface of BamHI initiated by DNA binding and dissociation using a solvatochromic fluorophore

To detect the local structural change in an interface between proteins induced by the substrate binding and dissociation, a solvatochromic fluorescent N(beta)-L-alanyl-5-(N,N-dimethylamino)-naphthalene-1-sulfonamide (DanAla) was introduced into 132 position of the dimer interface in BamHI. Before addition of the substrate, the fluorescence from the normal planer excited state of DanAla moiety was observed as a main emission, and thereby the DanAla in the dimer interface is located in the hydrophobic microenvironment. The incubation with the substrate for 20 min induced the gradual increase in fluorescence intensity around 430 nm. The fact reflects that the polarity is reduced by the slight structural change initiated by the formation of the complex with the substrate. Furthermore, the incubation for more than 20 min caused the slight decrease in fluorescence around 430 nm and an appearance of fluorescence (560 nm) due to twisted intramolecular charge transfer (TICT) excited state. Therefore, the DanAla is exposed to comparative polar environment after the dissociation of the substrate. The fluorescence lifetime as a minor component, which is attributed to the TICT excited state, was reduced by addition of the substrate. The results provide that the hydrophobicity in the dimer interface is increased by the substrate binding. Interestingly, we found that the structure of an initial form is different from that of a refolded form after the dissociation of the substrate using a spectral subtraction technique. We have achieved detection of the changing structure induced by the substrate binding and dissociation using a steady-state and time-resolved fluorescence.     

Intramolecular exciplex and intermolecular excimer formation of 1,8-naphthalimide-linker-phenothiazine dyads

Steady-state fluorescence spectra were measured for 1,8-naphthahlimide-linker-phenothiazine dyads (NI-L-PTZ, where L = octamethylenyl ((CH2)8) and 3,6,9-trioxaundecyl ((CH2CH2O)3C2H4)), NI-C8-PTZ and NI-O-PTZ, as well as the NI derivatives substituted on the nitrogen atom with various linker groups without PTZ as the reference NI molecule in n-hexane. Normal fluorescence peaks were observed at 367-369 nm in all NI molecules together with a broader emission around 470 nm, which is assigned to the excimer emission between the NI in the singlet excited state (1NI*) and the NI moiety of another NI molecule (1[NI/NI]*). In addition, a broad peak around 600 nm was observed only for NI-L-PTZ, which is assigned to an intramolecular exciplex emission between donor (PTZ) and acceptor (NI) moieties in the excited singlet state, 1[NI-L-NI]*. The formation of an intramolecular exciplex corresponds to the existence of a conformer with a weak face-to-face interaction between the NI and PTZ moieties in the excited state because of the long and flexible linkers. The excited-state dynamics of the NI molecules in n-hexane were established by means of time-resolved fluorescence spectroscopy.     

Crystal and molecular structure of a new diterpenyl glycoside from Pteris cretica L.

The crystal and molecular structure of a new diterpenyl glycoside, Ptr-1, is presented. The crystal is triclinic, space group P1, with a = 8.2414(8) Å, b = 13.0826(9) Å, c = 6.1427(8) Å, = 95.345(9)°, = 111.589(8)°, = 96.726(7)°, V = 604.9(1) ų, Z = 1. The structure was solved by direct methods and refined by full-matrix least-squares methods to a final R = 0.049 (Rw = 0.099) for 1872 independent reflections. The molecular structure is based on a glycopyranosyl group and a tetracyclic group. The glycopyranosyl group is -D-allopyranosyl group. The tetracyclic group consists of 1 five-membered and 3 six-membered rings.     

Formation of the dimer radical cation of aromatic sulfide on the TiO2 surface during photocatalytic reactions

The formation of the dimer radical cation (D*+) of 4-(methylthio) benzoic acid on a TiO2 surface is demonstrated using the time-resolved diffuse reflectance technique. The observed time-resolved diffuse reflectance spectral shape significantly depends on the substrate concentrations. The substrate concentration dependences of the initial transient signal intensity (%abs.(t=0)) and the amount of adsorbates (n(ad)) clearly suggest that the formation of D*+ is attributableto the high local substrate concentration on the TiO2 surface. The electronic influence of substituents on the formation of D*+ is also discussed.     

Synthesis and characterization of macrocyclic ligands containing benzene and/or pyridine rings and their nickel(II), copper(II) and zinc(II) complexes

Macrocycles, 7,16-diethyl-5,6,7,8,9,14,15,16,17,18-decahydrodibenzo[b,i][1,4,8,11]tetraazacyclotetradecine ( 2B ), 7,16-diethyl-5,6,7,8,9,14,15,16,17,18-decahydro-(E)dipyrido[b,i][1,4,8,11]tetraazacyclotetradecine ( 2E ) and 7,16-diethyl-5,6,7,8,9,14,15,16,17,18-decahydro-(Z)-dipyrido[b,i][1,4,8,11]tetraazacyclotetradecine ( 2Z ), have been synthesized by hydrogenation of 7,16-diethyl-5,14-dihydrodibenzo[b,i][1,4,8,11]tetraazacyclotetradecine and 7,16-diethyl-5,14-dihydro-(E)- or -(Z)-dipyrido[b,i][1,4,8,11]tetraazacyclotetradecine. In each case, two isomers were produced with differing orientations of the ethyl groups relative to the macrocyclic plane. The isomers were separated by repeated recrystallization. Carbon-13 nmr spectra for the metal-free ligands were used to distinguish between the two isomers. The nickel(II), copper(II) and zinc(II) complexes of the two isomers of 2B were prepared and their spectroscopic data were determined. The ligand-field bands in the 15000–30000 cm^?1 region for the nickel(II) and copper(II) complexes are consistent with square-planar configurations. A strong band appearing at ca. 3200 cm^?1 in the infrared spectra was assigned to the N-H stretching mode which shifted to lower frequency upon metal coordination.