Esrf 10th users meeting

We explored diffraction enhanced imaging (DEI) in both planar and computed tomography (CT) modes for early detection of beta amyloid deposition, a hallmark feature in Alzheimer's disease (AD). Since amyloid plaques precede clinical symptoms by years, their early detection is of great interest. These findings were correlated with results from synchrotron infrared microspectroscopic imaging and X-ray fluorescence microscopy, to determine the secondary structure of the amyloid beta protein and metal concentration in the amyloid plaques, respectively.     

The Biosynthesis of Cellulose

Abstract

Cellulose is one of the major commercial products of Sweden and constitutes the most abundant of the natural polymer systems. Thus, it is of interest to review the molecular design and architecture of cellulose with particular reference to the controls of its biosynthesis. The bioassembly process is highly ordered and structured, reflecting the intricate series of events which must occur to generate a thermodynamically metastable crystalline submicroscopic, ribbonlike structure. The plant cell wall is an extremely complex composite of many different polymers. Cellulose is the “reinforcing rod” component of the wall. True architectural design demands a polymer which can withstand great flexing and torsional strain. Using comparative Hydrophobic Cluster Analysis of a bacterial cellulose synthase and other glycosyl transferases, the multidomain architecture of glycosyl transferases has been analyzed. All polymerization reactions which are processive require at least three catalytic sites located on two different domains. In contrast, retaining reactions with glycosyl transferases require only a single domain and two sites. Cellulose synthase appears to have evolved a mechanism to simultaneously bind at least three UDP-glucoses and to polymerize, by double addition, two UDP-glucoses in such a manner that the 2-fold screw axis of the β-1,4-glucan chain is maintained. Thus, no primer is required as the glucose monomers are added two-by-two to the growing chain. At the next higher level of assembly, the catalytic sites simultaneously polymerize parallel glucan chain polymers in close proximity so that they will favorably associate to crystallize into the metastable cellulose I allomorph. Recent energy analysis suggests that the first stage of this association is the formation of a minisheet through van der Waals forces, followed by layering of these minisheets to form the crystalline microfibril. In native cellulose biogenesis, the microfibril shape and size appear to be determined by a multimeric enzyme complex (TC) which resides in the plasma membrane. This complex, known as a terminal complex, was discovered through electron microscopy of freeze fracture replicas. The entire complex moves in the plane of the fluid plasma membrane as the result of polymerization/crystallization reactions. The assembly stages for native cellulose I are coordinated on a spatial/temporal scale, and they are under the genetic control of the organism. This might lead one to conclude that cellulose I could only be assembled with Nature's indigenous machinery; however, this is not the case. Recently, in collaboration with Professor Kobayashi and his colleagues in Sendai and Tokyo, we have synthesized cellulose I abiotically under conditions very different from those in the living cell or from isolated cell components. Purification of an endoglucanase from Trichoderma which serves as the catalyst and the addition of β-cellobiosyl fluoride as the substrate in acetonitrile/acetate buffer has led to the assembly of synthetic cellulose I. Although natural and synthetic assembly pathways are very different, there are similar, underlying fundamental mechanisms common to both. These mechanisms will be discussed in relation to the more thermodynamically stable allomorph of cellulose (cellulose II) first demonstrated by Professor Rånby in 1952. The evolution of cellulose biosynthesis will be summarized in terms of the demands for maintaining optimal cellular environments to generate the complex macromolecular assemblies for cell wall biogenesis. Nature provides an exceptional model for cellulose biosynthesis that will lead us toward the biotechnological production of improved natural cellulose as well as synthetic cellulose and its derivatives.     

The Synthesis and Characterization of Poly Oxy(2-methyl-1,3-phenylene) oxyisophthaloxyl-b-Oxy(2-methyl-1,3-phenylene)oxyterephthaloxyl

The syntheses and characterizations of poly[oxy(2-methyl-1,3-phenylene) oxyisophthaloyl-b-oxy (2-methyl-1,3-phenylene)oxy-terephthaloyl] and the corresponding homopolymers are described. The synthesis involves the coupling of dihydroxy-terminated homo-polymers with terephthaloyl chloride. The resulting block copoly-ester was characterized by infrared spectroscopy, proton and carbon- 13 nuclear magnetic resonance spectroscopy, solution viscosity, differential scanning calorimetry, and thermogravimetric analysis.     

Convenient Synthesis of 2,7-Diamino-9,9- bis(4-aminophenyl)fluorene

For the synthesis of 2,7-diamino-9,9-bis(4-aminophenyl)fluorene 2 , first 2,7-dinitro-9,9-bis(4-aminophenyl)fluorene 1 was synthesized by the reaction of 2,7-dinitro-9-fluorenone with aniline and aniline hydrochloride. 2 was obtained by the reduction of 1 with hydrazine hydrate and 10% palladium on carbon.     

Reaction of 3-Diazocamphor with Silver Ion - Formation of Tricyclanone

The usual method of formation of tricyclanone (1) involves thermolysis of an intimate mixture of 3-diazocamphor (3) and copper powder and is thought to involve ketocarbene (5).¹ Recently this method has been supplemented² by one which involves reaction of 3,3-dibromocamphor with diethylzinc in benzene where α-elimination to give ketocarbene (5) is mediated by 3-bromocamphor carbanion whose role is indicated by trapping as 3-bromocamphor; this material accounts for ca. 10% of product even after prolonged reaction times.     

Spontaneous formation of liquid crystalline phases and phase transitions in highly concentrated plasmid DNA

The liquid crystalline (LC) properties of two supercoiled plasmid DNA samples, pBSK (2958 bp) and pGEM (3000 bp), have been studied using polarised light microscopy (PLM), circular dichroism (CD) and UV–Vis spectroscopy. The influence of methods of isolation on plasmid LC behaviour is described, and using PLM we have demonstrated the spontaneous formation of cholesteric fingerprint-like textures. Preliminary studies of LC phase transitions in pGEM show the irreversibility of LC phase formation, as a consequence of changes in the tertiary structure of supercoiled plasmids. Using UV–Vis spectroscopy a hyperchromic effect was observed with increasing temperature. The CD spectra clearly showed structural changes, and probably mismatching of DNA bases, during cooling. Finally, we have observed an irreversible phase transition in plasmid DNA which is very different from that previously reported in linear DNA.     

A radioanalytical phantom for assessing the efficacy of electrokinetic decontamination of entrained radioactivity within concrete media

A phantom for the evaluation of electrokinetic remediation of radioactive species from water saturated concrete is described. The phantom has been designed to be a general analogue for environments where structural concrete is saturated by radioactive aqueous solutions and where electrokinetic remediation may be deployed. It is also a specific analogue for the walls of storage ponds for legacy spend nuclear fuel pins where the pond water comprises a large volume of hazardous active waste that may penetrate the pond wall. The fabricated phantom was evaluated using a fixed electrical potential to monitor the rate of cationic transport of K⁺ through concrete samples of different thickness (20 and 35 mm respectively). Results of the evaluation show K⁺ diffusion coefficients of 5.20 × 10^?13 and 7.61 × 10^?13 m² s^?1 for the 20 mm and 35 mm samples, consistent with those seen in literature for the transport of caesium through concrete of similar thickness. The phantom offers a means of experimental validation of computational electrokinetic models as well as providing a basis to test the effects of electrode material on ionic transport rates, to interrogate the effects of pH on all components of the system, and as a basis for instruction, education and training in nuclear decommissioning and waste treatment.     

Analytical theory of gamma-encoded double-quantum recoupling sequences in solid-state nuclear magnetic resonance

Many important double-quantum recoupling techniques in solid-state NMR are classified as being gamma-encoded. This means that the phase of the double-quantum effective Hamiltonian, but not its amplitude, depends on the third Euler angle defining the orientation of the molecular spin system in the frame of the magic-angle-spinning rotor. In this paper, we provide closed analytical solutions for the dependence of the powder-average double-quantum-filtered signal on the recoupling times, within the average Hamiltonian approximation for gamma-encoded pulse sequences. The validity of the analytical solutions is tested by numerical simulations. The internuclear distance in a (13)C(2)-labelled retinal is estimated by fitting the analytical curves to experimental double-quantum data.