CONTRASTING STRUCTURAL IMPACTS INDUCED BY cis-syn CYCLOBUTANE DIMER AND (6–4) ADDUCT IN DNA DUPLEX DECAMERS: IMPLICATION IN MUTAGENESIS AND REPAIR ACTIVITY

Abstract—
The relative biological importance of cis-syn cyclobutane dimer and pyrimidine(6–4)pyr-imidone photoadduct ([6–4] photoadduct) appears to be dependent on the biological species, dipyrimidine sites and the local conformational variation induced at the damaged sites. The single-stranded deoxyn-ucleotide 10-mers containing the site-specific (6–4) adduct or cis-syn cyclobutane dimer of thymidylyl (3'-5')-thymidine were generated by direct photolysis of d(CGCATTACGC) with UVC (220–260 nm) irradiation or UVB (260–320 nm) photosensitization. Three-dimensional structures of the duplex cis-syn and (6–4) decamers of d(CGCATTACGC)d(GCGTAATGCG) were determined by NMR spectroscopy and the relaxation matrix refinement method. The NMR data and structural calculations establish that Watson-Crick base pairing is still intact at the cis-syn dimer site while the hydrogen bonding is absent at the 3'-side of the (6–4) lesion where the T → C transition mutation is predominantly targeted. Overall conformation of the duplex cis-syn decamer was B-DNA and produced a 9° bending in the DNA helix, but a distinctive base orientation of the (6–4) lesion provided a structural basis leading to 44° helical bending. The observed local structure and conformational rigidity at the (6–4) adduct of the thymidylyl(3'-5')-thymidine (T-T [6–4]) lesion site suggest the potential absence of hydrogen bonding at the 3' sides of the (6–4) lesion with a substituted nucleotide during replication under SOS conditions. Contrasting structural distortions induced by the T-T (6–4) adduct with respect to the T-T cis-syn cyclobutane pyrimidine photodimer may explain the large differences in mutation spectrum and repair activities between them.     

Novel stereoselective molecularly imprinted polymers via ring-opening metathesis polymerisation

Stereoselective molecularly imprinted polymers (MIPs) have been synthesised via ring-opening metathesis polymerisation, in essentially, quantitative yield. A covalent imprinting strategy was followed during the network formation of the chiral sorbent. Recognition of the substrate however involved non-covalent interactions; a combination of hydrogen bonding and the chiral environment presented by the imprinted cavities. The enantiomeric excess achievable with these new MIPs is solvent dependent and stereoselectivities of up to 20% e.e. (separation factor α=2.2) were found in batch equilibrations.     

Synthetic analgesics: preparation of racemic 6,7-benzomorphans

A simple preparation of 2-carbomethoxy-2-azabicyclo[3.3.1]nonan-6-one ($\text{7}$ and its conversion to the racemic benzomorphans: $\text{9}$, $\text{10}$, $\text{14}$ are described.     

Extraction-photometric determination of vanadium(V) with N-hydroxy-N-m-tolyl-N′-(2-methyl-5-chloro)phenyl-p-toluamidine hydrochloride in the presence of acetic,monochloroacetic, and phenylacetic acids

N-Hydroxy-N-m-tolyl-N′-(2-methyl-5-chloro)phenyl-p-toluamidine hydrochloride (HTMCPTH), a monobasic and bidentate chelating agent which reacts with vanadium(V) in carboxylic acid media to develop a blue-violet complex, has been employed as a highly selective reagent for extraction and direct photometric determination of the metal. Solvent extraction experiments indicate that from aqueous acetic acid (1.0–10.0 M), monochloroacetic acid (0.1–10.0 M), and phenylacetic acid (at pH 0.5–6.0) vanadium(V) is quantitatively extracted into chloroform. Almost all common ions including Fe³⁺, Cu²⁺, Ni²⁺, Co²⁺, Mn²⁺, Cr³⁺, Ti⁴⁺, Zr⁴⁺, and Mo⁶⁺ do not interfere with the proposed method. The procedure has been utilized for accurate determination of vanadium in standard steels.     

σ,π-acetylido complexes via P---C bond cleavage of phosphinoacetylenes: X-ray structure of Fe2(CO)6(CCPh)(PPh2)

Solutions of Co^II salts of organic acids in primary amines absorb molecular oxygen rapidly and irreversibly forming μ-dioxygen—cobalt complexes. Thermolysis leads to a homopolar cleavage of the OO bond with subsequent radical reactions involving ligand amine. After thermolysis the capacity of oxygen uptake is reestablished (catalysis).     

Dispersing nanotubes with surfactants: a microscopic statistical mechanical analysis

A first theoretical study of surfactant-stabilized carbon nanotube dispersions is presented. Density functional theory is used to compute potential of mean force between nanotubes in an aqueous solution of cationic surfactant n-decyltrimethylammonium chloride. In agreement with experimental results, it is found that stable dispersions can be prepared for surfactant bulk concentrations below the critical micelle concentration. Computed density profiles of head and tail segments indicate that surfactants adsorb on nanotube surfaces in a random fashion rather than form cylindrical micelles, which is also in agreement with recent small-angle neutron scattering measurements.     

Preparation, separation and degradation of oligouronides produced by the polygalacturonic acid transeliminase of Bacillus pumilus.

Production of the end products of polygalacturonic acid degradation on a large scale was done by reacting free galacturonic acid with Bacillus pumilus polygalacturonic acid transeliminase (PATE, EC 4.2.2.2) to obtain a mixture of the barium salts of several oligouronides. Small amounts of the unsaturated oligouronides were separated by paper chromatography. Large quantities of unsaturated oligouronides were separated on a AG-1-X8 (formate) column by applying a sample of mixed oligouronides and stepwise elution was carried out with sodium formate buffer (pH 4.7). The unsaturated oligouronides were identified on the basis of chromatographic mobilities, Sephadex gel filtration data, COOH/CHO ratio, thiobarbituric acid-reacting material, bromine uptake, and chemical and enzymatic degradation data as unsaturated tri-, tetra-, and hexagalacturonic acids. The chemical degradation of these unsaturated oligouronides, done with 6 N HCl by heating at 100 degrees for 30 min, gave qualitatively identical products of hydrolysis. These products compared with authentic standards, were identified as galacturonic acid, formic acid, 5-formyl-2-furancarboxylic acid, and 2-furancarboxylic acid. Analysis of the enzymatic breakdown products of the higher unsaturated uronides showed that a minimum of four galacturonic acid units was required for the action of purified endo-PATE from B. pumilus. The unsaturated trimer was not attacked, thus accounting for its accumulation as the major end product of polygalacturonate degradation by this enzyme.     

Chemoselective thioacetalisation and transthioacetalisation of carbonyl compounds catalysed by tetrabutylammonium tribromide (TBATB)

Thioacetals and thioketals of various aldehydes and ketones were obtained directly from carbonyl compounds or by a transthioacetalisation process from cyclic O,O-acetals in the presence of dithiols and a catalytic amount of tetrabutylammonium tribromide (TBATB). Chemoselective thioacetalisation of aromatic aldehydes containing an electron-donating group in the presence of an aldehyde containing an electron-withdrawing group, aldehydes in the presence of ketones, aliphatic cyclic ketones in the presence of aromatic ketones and less hindered ketones in the presence of more hindered ketones have been achieved. A cyclic acetal containing an electron-donating group has been chemoselectively transthioacetalised in the presence of an acetal having an electron-withdrawing substituent. These selectivities are due to the intrinsic reactivity of the substrate themselves and are independent of the catalyst and reaction conditions. Shorter reaction times, mild reaction conditions, stability of acid sensitive protecting groups, high efficiencies, facile isolation of the desired products and the catalytic nature of the reagent are the attractive features of the present method.     

Solvent extraction and photometric determination of a microgram of cerium with N-p-tolyl-p-chlorobenzohydroxamic acid

A spectrophotometric method for determination of a microgram quantity of cerium with N-p-tolyl-p-chlorobenzohydroxamic acid is described. The orange-red-colored complex is extracted from chloroform at pH 9 which absorbs between 460 and 465 nm. Beer's law is obeyed at this wavelength. A clean-cut separation from many commonly occurring metal ions is easily accomplished. The system obeys Beer's law within the range of 0.5–28 ppm of cerium(IV). The molar absorptivity of cerium-N-p-tolyl-p-chlorobenzohydroxamic acid complex is 4.5 × 10³ liters mol^?1 cm^?1.