Supramolecular Arrangement and DFT analysis of Zinc(II) Schiff Bases: An Insight towards the Influence of Compartmental Ligands on Binding Interaction with Protein

We report, for the first time, a detailed crystallographic study of the supramolecular arrangement for a set of zinc(II) Schiff base complexes containing the ligand 2,6-bis((E)-((2-(dimethylamino)ethyl)imino)methyl)-4-R-phenol], where R=methyl/tert-butyl/chloro. The supramolecular study acts as a pre-screening tool for selecting the compartmental ligand R of the Schiff base for effective binding with a targeted protein, bovine serum albumin (BSA). The most stable hexagonal arrangement of the complex [Zn − Me] (R=Me) stabilises the ligand with the highest FMO energy gap (ΔE=4.22 eV) and lowest number of conformations during binding with BSA. In contrast, formation of unstable 3D columnar vertebra for [Zn − Cl] (R=Cl) tend to activate the system with lowest FMO gap (3.75 eV) with highest spontaneity factor in molecular docking. Molecular docking analyses reported in terms of 2D LigPlot+ identified site A, a cleft of domains IB, IIIA and IIIB, as the most probable protein binding site of BSA. Arg144, Glu424, Ser428, Ile455 and Lys114 form the most probable interactions irrespective of the type of compartmental ligands R of the Schiff base whereas Arg185, Glu519, His145, Ile522 act as the differentiating residues with ΔG=−7.3 kcal mol⁻¹.     

Diverse meta‐C−H Functionalization of Arenes across Different Linker Lengths

Arenes containing conformationally flexible long alkyl chains have been successfully functionalized at the meta‐position. Good to excellent meta selectivity is achieved for systems with up to 20 atoms between the target C?H bond and the coordinating heteroatom of the directing group. The palladium‐catalyzed functionalization reactions include alkylation, cyanation, olefination, and acetoxylation. The meta selectivity is exclusively governed by the design of flexible pyrimidine‐based scaffolds.     

MAS-NMR study of lithium zinc silicate glasses and glass-ceramics with various ZnO content

Lithium zinc silicate glasses of composition (mol%): 17.5Li₂O-(72−x)SiO₂-xZnO−5.1Na₂O−1.3P₂O₅−4.1B₂O₃, 5.5?x?17.7, were prepared by conventional melt-quenched technique and converted to glass-ceramic by controlled crystallization process. ²⁹Si and ³¹P MAS-NMR was used to characterize the structure of both glass and glass-ceramic samples. Despite the complex glass composition, Q², Q³ and Q⁴ sites are identified from ²⁹Si MAS-NMR, which relative intensities are found to vary with the ZnO content, indicating a network depolymerization by ZnO. Moreover, well separated Q³ and Q⁴ resonances for low ZnO content indicates the occurrence of phase separation. From ³¹P MAS-NMR, it is seen that phosphorus is mainly present in the form of ortho-(Q⁰) and pyro-phosphate (Q¹) structural units and variation of ZnO content did not have much effect on these resonances, which provides an additional evidence for phase separation in the glass. On conversion to glass-ceramics, lithium disilicate (Li₂Si₂O₅), lithium zinc ortho-silicate (Li₃Zn_0.5SiO₄), tridymite (SiO₂) and cristobalite (SiO₂) were identified as major silicate crystalline phases. Using ²⁹Si MAS-NMR, quantification of these silicate crystalline phases is carried out and correlated with the ZnO content in the glass-ceramics samples. In addition, ³¹P spectra unambiguously revealed the presence of crystalline Li₃PO₄ and (Na,Li)₃PO₄ in the glass-ceramics.     

Importance of solution equilibria in the directed assembly of metal chalcogenide mesostructures

We describe the new nanostructured Pt/Ge/Se materials prepared from the molecular units [Ge2Se6](4-) and [GeSe4](4-) and linking Pt(2+) ions in the presence of surfactant micelles. X-ray diffraction coupled with transmission electron microscopy images reveals hexagonal pore symmetry. The solvent dependence and solution speciation of these building blocks were investigated by means of multinuclear NMR spectroscopy and by fast atom bombardment (FAB) mass spectroscopy and it is shown that rapid exchange equilibrium is reached between species like [Ge4Se10](4-), [Ge2Se6](4-), and [GeSe4](4-) in both water and formamide. This results in multiple Ge/Se anions being incorporated in the mesostructured materials which is supported by Raman and IR spectroscopic data. It is likely that the presence of multiple building units both in water and formamide solutions favors the assembly of mesostructured metal chalcogenides with good pore order. Systematic variation of both surfactant headgroup and chain length modulates the optoelectronic properties of the mesostructures. The Pt/Ge/Se materials show sharp band gap transitions in the range of 1.24-1.97 eV. Finally, the materials exhibit reversible ion-exchange properties and a marked inorganic framework flexibility that enables a contraction-expansion process in response to the exchange. The Pt/Ge/Se framework possesses a very high surface area as estimated by small-angle X-ray scattering techniques.     

Cd2+-induced conformational change of a synthetic metallopeptide: slow metal binding followed by a slower conformational change

A two-stranded alpha-helical coiled coil was prepared having a Cys 4 metal-binding site within its hydrophobic interior. The addition of Cd2+ results in the incorporation of 2 equiv of metal ion, which is accompanied by a conformational change of the peptide, as observed by circular dichroism (CD) spectroscopy. Isothermal titration calorimetry (ITC) shows that the addition of Cd2+ is accompanied by two thermodynamic events. A comparison of the time dependence of the ITC behavior with those of the UV absorption and CD behavior allows the assignment of these events to a preliminary endothermic metal-binding step followed by a slower exothermic conformational change.     

Investigation of the possible origins of sulfur in 19th century salted paper photographs by x‐ray fluorescence spectroscopy

An X‐ray fluorescence method to determine whether sulfur is present in 19th century photographs due to intentional toning or to environmental deterioration is proposed. In the 19th century salted paper print photographic process, AgCl formed on the surface of a sheet of paper was exposed to sunlight in contact with a negative, leading to the printing out of a Ag image that was fixed by immersing it in a sodium thiosulfate solution or hypo. The improper execution of the fixing in these photographs may result in the presence of sulfur, mostly manifested in image fading, irregular staining, and discoloration. Also, 19th century artists produced salted paper prints with a variety of image tonalities, for example, by using an artificially aged thiosulfate bath. The presence of sulfur in photographs may also be due to sulfur‐containing environmental pollutants. Therefore, knowledge about the location and amounts of sulfur is important to understand the artistic technique and/or the deterioration processes. In this study, the amounts of sulfur and the silver to sulfur signal ratios were determined for a salted paper print made in the laboratory following a 19th century procedure and for two artistic salted paper photographs using X‐ray fluorescence and standards prepared with different amounts of retained hypo and quantified by inductively coupled plasma atomic emission spectroscopy. The amounts of sulfur and the normalized silver to sulfur ratios for the artistic photographs were evaluated based on the results obtained in the samples prepared in the laboratory and in the context of the 19th century practices. Copyright © 2016 John Wiley & Sons, Ltd.     

A Novel Trihybrid Material Based on Renewables: An Efficient Recyclable Heterogeneous Catalyst for C−C Coupling and Reduction Reactions

The generation of organic–inorganic hybrid materials from renewable resources and their utilization in basic and applied areas has been at the forefront of research in recent years for sustainable development. Herein, a novel organic–inorganic trihybrid material was synthesized by in situ generation of palladium nanoparticles (PdNPs) in a hybrid gel matrix based on renewable chemicals. Constituents of the hybrid gel included a pentacyclic triterpenoid arjunolic acid extractable from Terminalia arjuna and the leaf extract of Chrysophyllum cainito rich in flavonoids. We took advantage of the presence of flavonoid molecules in this hybrid gel to generate an advanced trihybrid gel through in situ reduction of doped Pd^II salts to stable PdNPs. The xerogel of this trihybrid material was used as a recyclable heterogeneous catalyst for C?C coupling and reduction reactions in aqueous media. We also demonstrated that the in situ generated PdNPs containing trihybrid material was a more efficient catalyst than the trihybrid material generated with presynthesized PdNPs.     

Dual-labeled oligonucleotide probe for sensing adenosine via FRET: a novel alternative to SNPs genotyping

A novel FRET based strategy for DNA sequence analysis utilising base-discriminating fluorescence (BDF) nucleoside, (Py)U/(2-Ant)U, as donor in the dual-labelled oligonucleotide probe is reported; a selective/specific emission from acceptor, was observed upon excitation at the donor, only when the opposite base of the "smart" fluorescently labeled BDF nucleoside, (Py)U/(2-Ant)U, is adenine on the complementary target sequence.     

Design of a novel G-quenched molecular beacon: a simple and efficient strategy for DNA sequence analysis

G-quenched MBs are devised from readily available starting materials and used for sequence specific DNA detection with high efficiency.