Thermodynamic response functions of fluids: a microscopic approach based on NpT Monte Carlo

On the basis of NpT Monte Carlo simulations, a detailed analysis on the microscopic origins of some specific features of thermodynamic response functions of fluids is performed. Specifically, the residual isobaric heat capacity C(p) (res), the isobaric thermal expansivity alpha(p), and the isothermal compressibility kappa(T) for Lennard-Jones methane and optimized potential for liquid simulations (OPLS) methanol have been determined via standard techniques. For the former, data along the liquid, gas, and supercritical regions are presented, while a wide temperature range at a single supercritical pressure is covered for the latter. They have been obtained by computing the various pairwise fluctuations contributing to each property. Attention is mainly focused on isothermal and isobaric maxima found for both C(p) (res) and alpha(p), which have been rationalized at a molecular level using qualitative arguments. It is encountered that maxima emerge as a natural consequence of the destruction of fluid structure as temperature is increased or as pressure is decreased. The results for Lennard-Jones methane reveal the competition of energetic and volumetric effects, while those for OPLS methanol evidence that hydrogen-bonding is dominant as energetic effects are concerned. Further discussion on previous results and alternative approaches using equations of state as well as on closely related topics such as "maxima and critical phenomena" is included.     

Discovery of novel polyamine analogs with anti-protozoal activity by computer guided drug repositioning

Chagas disease is a parasitic infection caused by the protozoa Trypanosoma cruzi that affects about 6 million people in Latin America. Despite its sanitary importance, there are currently only two drugs available for treatment: benznidazole and nifurtimox, both exhibiting serious adverse effects and limited efficacy in the chronic stage of the disease. Polyamines are ubiquitous to all living organisms where they participate in multiple basic functions such as biosynthesis of nucleic acids and proteins, proliferation and cell differentiation. T. cruzi is auxotroph for polyamines, which are taken up from the extracellular medium by efficient transporters and, to a large extent, incorporated into trypanothione (bis-glutathionylspermidine), the major redox cosubstrate of trypanosomatids. From a 268-compound database containing polyamine analogs with and without inhibitory effect on T. cruzi we have inferred classificatory models that were later applied in a virtual screening campaign to identify anti-trypanosomal compounds among drugs already used for other therapeutic indications (i.e. computer-guided drug repositioning) compiled in the DrugBank and Sweetlead databases. Five of the candidates identified with this strategy were evaluated in cellular models from different pathogenic trypanosomatids (T. cruzi wt, T. cruzi PAT12, T. brucei and Leishmania infantum), and in vitro models of aminoacid/polyamine transport assays and trypanothione synthetase inhibition assay. Triclabendazole, sertaconazole and paroxetine displayed inhibitory effects on the proliferation of T. cruzi (epimastigotes) and the uptake of putrescine by the parasite. They also interfered with the uptake of others aminoacids and the proliferation of infective T. brucei and L. infantum (promastigotes). Trypanothione synthetase was ruled out as molecular target for the anti-parasitic activity of these compounds.     

1H‐Detected Solid‐State NMR Studies of Water‐Inaccessible Proteins In Vitro and In Situ

¹H detection can significantly improve solid‐state NMR spectral sensitivity and thereby allows studying more complex proteins. However, the common prerequisite for ¹H detection is the introduction of exchangeable protons in otherwise deuterated proteins, which has thus far significantly hampered studies of partly water‐inaccessible proteins, such as membrane proteins. Herein, we present an approach that enables high‐resolution ¹H‐detected solid‐state NMR (ssNMR) studies of water‐inaccessible proteins, and that even works in highly complex environments such as cellular surfaces. In particular, the method was applied to study the K⁺ channel KcsA in liposomes and in situ in native bacterial cell membranes. We used our data for a dynamic analysis, and we show that the selectivity filter, which is responsible for ion conduction and highly conserved in K⁺ channels, undergoes pronounced molecular motion. We expect this approach to open new avenues for biomolecular ssNMR.     

Thermal stability of paracetamol and its pre-formulates obtained by spray drying

Organobentonites were synthesized by treating Na-bentonites (Wyomingand Re?adiye) with cetylpyridinium chloride (CPC) using ion exchangemethod. The difference in the basal spacing by 0.65 Å and a higher massloss by 13.32% of organobentonite (Wyoming) in the temperature range 200–550°Ccomparing with that of organobentonite (Re?adiye) were in conformitywith the CEC values of organobentonites. The HOH stretching and bending peaksof bentonites became sharper following the treatment with the organo-cation.The intensity decrease of the Al–OH band for organobentonite (Re?adiye)and in particular, the significantly higher amount of m-cresolretained by the organobentonite of lower CEC than that by the organobentonite(Wyoming) indicate the influence of the CP cation on the adsorption process.     

Multiparticle correlations in resonance-matter formation

The effect of multiparticle correlations on resonance and pion populations, in relativistic nuclear reactions, is calculated in the context of an intranuclear cascade model which includes N-body (N > 2) collisional processes. The resonance-matter population present in the highly-compressed phase of nucleus-nucleus collisions is investigated, in reactions between different intermediate-mass nuclear systems. Received: 29 December 1998 / Revised version: 20 December 1999     

Characterization of O2 (1Δg)-derived oxidation products of tryptophan: A combination of tandem mass spectrometry analyses and isotopic labeling studies

The fragmentation mechanisms of singlet oxygen [O(2) ((1)Delta(g))]-derived oxidation products of tryptophan (W) were analyzed using collision-induced dissociation coupled with (18)O-isotopic labeling experiments and accurate mass measurements. The five identified oxidized products, namely two isomeric alcohols (trans and cis WOH), two isomeric hydroperoxides (trans and cis WOOH), and N-formylkynurenine (FMK), were shown to share some common fragment ions and losses of small neutral molecules. Conversely, each oxidation product has its own fragmentation mechanism and intermediates, which were confirmed by (18)O-labeling studies. Isomeric WOH lost mainly H(2)O + CO, while WOOH showed preferential elimination of C(2)H(5)NO(3) by two distinct mechanisms. Differences in the spatial arrangement of the two isomeric WOHs led to differences in the intensities of the fragment ions. The same behavior was also found for trans and cis WOOH. FMK was shown to dissociate by a diverse range of mechanisms, with the loss of ammonia the most favored route. MS/MS analyses, (18)O-labeling, and H(2)(18)O experiments demonstrated the ability of FMK to exchange its oxygen atoms with water. Moreover, this approach also revealed that the carbonyl group has more pronounced oxygen exchange ability compared with the formyl group. The understanding of fragmentation mechanisms involved in O(2) ((1)Delta(g))-mediated oxidation of W provides a useful step toward the structural characterization of oxidized peptides and proteins.     

Structural and Mössbauer characterization of the ball milled Fex(Cr2O3)1−x system

The Fe_x(Cr₂O₃)_1?x system, with 0.10 ≤ X ≤ 0.80, was mechanically processed for 24 h in a high-energy ball-mill. In order to examine the possible formation of iron–chromium oxides and alloys, the milled samples were, later, thermally annealed in inert (argon) and reducing (hydrogen) atmospheres. The as-milled and annealed products were characterized by X-ray diffraction, Mössbauer spectroscopy, transmission electron microscopy and magnetization. The as-milled samples showed the formation of an Fe_1+YCr_2?YO_4?δ nanostructured and disordered spinel phase, the α₁-Fe(Cr) and α₂-Cr(Fe) solid solutions and the presence of non-exhausted precursors. For the samples annealed in inert atmosphere, the chromite (FeCr₂O₄) formation and the recrystallization of the precursors were verified. The hydrogen treated samples revealed the reduction of the spinel phase, with the phase separation of the chromia phase and retention of the Fe–Cr solid solutions. All the samples, either as-milled or annealed, presented the magnetization versus applied field curves typical for superparamagnetic systems.     

Automation of a Mass Flow Controller for Application in Time‐Multiplex SF6+CH4 Plasma Etching of Silicon

In this work is proposed the automation of a gas injection (mass flow) system in order to generate timemultiplex SF₆/CH₄ radiofrequency plasma applied for silicon (Si) etching process. The control of the gas injection system is important in order to better control the process anisotropy, i.e., the high‐aspect‐ratio of mask pattern transfer to substrate surface. In other words, this control allows the attainment of deep Si etching process. Here, the automation of the gas injection system was realized through the interface between a computer and a data acquisition board. The automation software developed allows controlling the gas flow rate switching it on and off during whole process through the use of a square waveform routine, intermittent flow, beyond the conventional condition of a fixed value for gas flow rate, continuous flow. In order to investigate the time‐multiplex SF₆/CH₄ plasma etching of Si, the residual gas analysis was performed. The investigations were made keeping the following process parameters: flow of SF₆: 10 sccm, flow of CH₄: 6 sccm, 100 W rf power, wave period: 20 sec. It were monitored the partial pressure of SF⁺ ₅ (parent neutral specie: SF₆), CH⁺₄ (CH4) and SiF+ ₃ (SiF4) species as a function of time for different gas flow switching and duty cycle. The results showed that with the generation of plasma occurs a drastic change in behavior of partial pressures of SF⁺ ₅ and CH⁺₄ species. Moreover, it is evidenced that the interactions between the SF₆ and CH₄ fragments promotes a high production rate of HF molecule and consequently a decrease of atomic fluorine, mainly when plasma is on. Finally, the behavior of partial pressure of SiF⁺ ₃ specie for alternatively intermittent SF₆ and CH₄ flow operation shows us that both the etching processes and the deposition of a polymer passivation layer are occurring alternatively, a desirable feature for multi‐step etching process (© 2012 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

New ideas in neutrino detection

What is new in the field of neutrino detection? In addition to new projects probing both the low and high ends of the neutrino energy scale, an inexpensive, effective technique is being developed to allow tagging of antineutrinos in water Cherenkov (WC) detectors via the addition to water of a solute with a large neutron cross-section and energetic γ daughters. Gadolinium is an excellent candidate since in recent years it has become very inexpensive, now less than $8 per kilogram in the form of commercially available gadolinium trichloride. This non-toxic, non-reactive substance is highly soluble in water. Neutron capture on gadolinium yields an 8.0 MeV gamma cascade easily seen in detectors like Super-Kamiokande. The uses of GdCl₃ as a possible upgrade for the Super-Kamiokande detector — with a view toward improving its performance as an antineutrino detector for supernova neutrinos and reactor neutrinos — are discussed, as are the ongoing R&;D efforts which aim to make this dream a reality within the next two years.     

The effect of mechanochemical activation on the reactivity in the MgO–Al2O3–SiO2 system

Samples of the MgO–Al₂O₃–SiO₂ ternary system, constituted by 28.5 mol% ofMgO, 28.5 mol% of Al₂O₃ and 43mol%of SiO₂, were activated in a roll mill and calcined at different temperatures. The influence of the grinding time, the used SiO₂ precursor and activation medium, furthermore the mass ratio between the powdered sample and zirconia cylinders was investigated on the reactivity of the MgO–Al₂O₃–SiO₂ ternary system. FTIR spectra and the X-ray powder diffraction patterns indicates the formation of Mg(OH)₂ at 393 K, of forsterite (MgSi₂O₅) and enstatite (MgSiO₃) at 1223 K and of spinel (MgAl₂O₄) between 1223 and 1523 K in some samples. The presence of cordierite (Mg₂Al₂Si₅O₁₈) was observed at 1523 K, a reaction pathway concerning its formation was proposed.