On Not Counting the Cost: Ad Hocness and Disconfirmation

I offer an account of ad hocness that explains why the adoption of an ad hoc auxiliary is accompanied by the disconfirmation of a hypothesis H. H must be conjoined with an auxiliary (or set of auxiliaries) a′, which is improbable antecedently given H, while ~H does not have this disability. This account renders it unnecessary to require, for identifying (bad) ad hocness, that either a′ or H have a posterior probability less than or equal to 0.5; there are also other reasons for abandoning that condition. I distinguish between formal ad hocness, which is bad in the probabilistic sense that it results in disconfirmation of H, and argumentative ad hocness, which actually involves bad reasoning on the part of a subject. The latter is what I call “not counting the cost.” This distinction allows us to see why the 0.5 condition appeared attractive in the first place. The concept of not counting the cost also has implications for other areas of research, including both a Bayesian concept of unfalsifiability and the classic epistemological question of the problem of the external world.     

Are women better mindreaders? Sex differences in neural correlates of mentalizing detected with functional MRI

Background

Oxidative stress plays a key role in the neuropathogenesis of Human Immunodeficiency Virus-1 (HIV-1) infection causing apoptosis of astroglia cells and neurons. Recent data have shown that oxidative stress is also responsible for the acceleration of human fibroblast telomere shortening in vitro. In the present study we analyzed the potential relations occurring between free radicals formation and telomere length during HIV-1 mediated astroglial death.

Results

To this end, U373 human astrocytoma cells have been directly exposed to X4-using HIV-1IIIB strain, for 1, 3 or 5 days and treated (where requested) with N-acetylcysteine (NAC), a cysteine donor involved in the synthesis of glutathione (GSH, a cellular antioxidant) and apoptosis has been evaluated by FACS analysis. Quantitative-FISH (Q-FISH) has been employed for studying the telomere length while intracellular reduced/oxidized glutathione (GSH/GSSG) ratio has been determined by High-Performance Liquid Chromatography (HPLC). Incubation of U373 with HIV-1IIIB led to significant induction of cellular apoptosis that was reduced in the presence of 1 mM NAC. Moreover, NAC improved the GSH/GSSG, a sensitive indicator of oxidative stress, that significantly decreased after HIV-1IIIB exposure in U373. Analysis of telomere length in HIV-1 exposed U373 showed a statistically significant telomere shortening, that was completely reverted in NAC-treated U373.

Conclusion

Our results support the role of HIV-1-mediated oxidative stress in astrocytic death and the importance of antioxidant compounds in preventing these cellular damages. Moreover, these data indicate that the telomere structure, target for oxidative damage, could be the key sensor of cell apoptosis induced by oxidative stress after HIV infection.     

Electronic, spectroscopic, and ion-sensing properties of a dehydro[m]pyrido[14]- and [15]annulene isomer library

An isomeric series of dehydro[m]pyrido[n]annulenes incorporating strained 1,4-buta-1,3-diyne units have been synthesized, where m = 2, n = 14 (1a-d); m = 2, n = 15 (2a,b); and m = 3, n = 15 (3). The number of pyridine rings and annulene ring π-electrons are denoted by m and n, respectively. The X-ray crystal structures of 1b and 1c confirmed their cyclic formulation. All macrocycles were found to be luminescent chromophores with differing isomer-dependent proton and metal ion-sensory emission responses, which appear collectively as analyte-specific color patterns. Within the series studied, 1a was singular in displaying the highest luminescence quantum yield and sharing the strongest emission energy and molar absorption changes upon protonation and Hg(II) binding. Spectroscopic and electrochemical results were supported by density functional theory calculations in showing 1a, 2a, and 3 to be low bandgap materials with lowest unoccupied molecular orbitals delocalized over the 1,4-di(pyridin-4-yl)buta-1,3-diyne bridges that provide a pathway for electronic communication between the nitrogens. Overall, the investigations suggest that 1a, 2a, and 3 would be excellent ligands for the construction of novel conjugated hybrid metallosupramolecular nanostructures, polymers, and ion-sensory systems.     

Rhodium-catalyzed cyclopropanations of 2-aryl-2H-chromenes with dialkyl malonate esters. A comparison of α-diazo derivatives and phenyliodonium ylides

Rhodium-catalyzed reactions of 2-aryl-substituted 2H-chromenes with α-diazo esters prepared from dimethyl and tert-butyl methyl malonates were investigated, and the results were compared with reactions carried out with phenyliodonium ylides prepared from the same esters. The phenyliodonium ylide prepared from dimethyl malonate was found to give superior yields of cyclopropane products compared to the corresponding α-diazo equivalent. However, this result was reversed with tert-butyl methyl malonate when Rh₂(S-TBSP)₄ was used to decompose the diazo compound. All reactions gave 1,1-cyclopropane diesters as single diastereomers.     

Structural diversity and versatility for organoaluminum complexes supported by mono- and di-anionic aminophenolate bidentate ligands

The present contribution describes the synthesis and structural characterization of structurally diverse organoaluminum species supported by variously substituted aminophenolate-type ligands: these Al complexes are all derived from the reaction of AlMe₃ with aminophenols 2-CH₂NH(R)-C₆H₃OH (1a, R = mesityl (Mes); 1b, R = 2,6-di-isopropylphenyl (Diip)) and 2-CH₂NH(R)-4,6-^tBu₂-C₆H₂OH (1c, R = Mes; 1d, R = Diip). The low temperature reaction of AlMe₃ with 1a–b readily affords the corresponding Al dimeric species [μ-η¹,η¹-N,O-{2-CH₂NH(R)-C₆H₄O}]₂Al₂Me₄ (2a–b), consisting of twelve-membered ring aluminacycles with two μ-η¹,η¹-N,O-aminophenolate units, as determined by X-ray crystallographic studies. Heating a toluene solution of 2a (80 °C, 3 h) affords the quantitative and direct formation of the dinuclear aluminium complex Al[η²-N; μ,η²-O-{2-CH₂N(Mes)-C₆H₄O}](AlMe₂) (4a) while species 2b, under the aforementioned conditions, affords the formation of the Al dimeric species [η²-N,O-{2-CH₂N(Dipp)-C₆H₄O}AlMe]₂ (3b), as deduced from X-ray crystallography for both 3b and 4a. In contrast, the reaction of bulky aminophenol pro-ligands 1c–d with AlMe₃ afford the corresponding monomeric Al aminophenolate chelate complexes η²-N,O-{2-CH₂NH(R)-4,6-^tBu₂-C₆H₂O}AlMe₂ (5c–d; R = Mes, Diip; Scheme 3) as confirmed by X-ray crystallographic analysis in the case of 5d. Subsequent heating of species 5c–d yields, via a methane elimination route, the corresponding Al-THF amido species η²-N,O-{2-CH₂N(R)-4,6-^tBu₂-C₆H₂O}Al(Me)(THF) (6c–d; R = Mes, Diip). Compounds 6c–6d, which are of the type {X₂}Al(R)(L) (L labile), may well be useful as novel well-defined Lewis acid species of potential use for various chemical transformations. Overall, the sterics of the aminophenol backbone and, to a lesser extent, the reaction conditions that are used for a given ligand/AlMe₃ set essentially govern the rather diverse “structural” outcome in these reactions, with a preference toward the formation of mononuclear Al species (i.e. species 5c–d and 6c–d) as the steric demand of the chelating N,O-ligand increases.     

Oxidation chemistry of uranium(III) complexes of Tpa: synthesis and structural studies of oxo,hydroxo, and alkoxo complexes of uranium(IV)

The crystal structure of the complex [U(tpa)(2)]I(3), 1 (tpa = tris[(2-pyridyl)methyl]amine), has been elucidated. The complex exists as only one enantiomer in the crystal leading to the chiral space group P2(1)2(1)2(1). The coordination geometry of the metal can be described as a distorted cube. Accidental oxidation of [U(tpa)(2)]I(3) led to the isolation of the unusual mononuclear bishydroxo complex of uranium(IV) [U(tpa)(2)(OH)(2)]I(2).3CH(3)CN, 2, which was structurally characterized. The controlled reaction of [U(tpa)(2)]I(3) with water resulted in the oxidation of the metal center and led to the formation of protonated tpa and of the trinuclear U(IV) oxo complex ([U(tpa)(mu-O)I](3)(mu(3)-I))I(2), 3. The solid state and solution structures of this trimer are reported. The pathway suggested for the formation of this complex is the oxidation of the [U(tpa)(2)]I(3) complex by H(2)O to form a U(IV) hydroxo complex which then decomposes, eliminating mono-protonated tpa. The comparison with the reported reaction with water of cyclopentadienyl derivatives points to a higher reactivity toward water reduction of the bis(tpa) complex with respect to the cyclopentadienyl derivatives. The reaction of U(III) with methanol in the presence of the supporting ligand tpa leads to formation of alkoxo complexes similarly to what is found for amide or cyclopentadienyl derivatives. The monomethoxide complex [U(tpa)I(3)(OMe)], 4, has been prepared in good yield by alcoholysis of the U(III) mono(tpa) complex. The crystal structure of this complex has been determined. The reaction of [U(tpa)(2)]I(3) with 2 equiv of methanol in acetonitrile allows the isolation of the bismethoxo complex of U(IV) [U(tpa)I(2)(OMe)(2)], 5, in 35-47% yield, which has been fully characterized. To account for the oxidation of U(III) to U(IV) the suggested mechanism assumes that hydrogen is evolved in both reactions.     

Detailed‐atomistic molecular modeling of small molecule diffusion and solution processes in polymeric membrane materials

Atomistic molecular modeling techniques have proven to be a very useful tool for the investigation of the structure and dynamics of dense amorphous membrane polymers and of transport processes in these materials. As illustrations, the results of extensive atomistic molecular dynamics investigations on the transport of different small molecules in flexible chain rubbery and stiff chain glassy polymers are discussed. For this purpose bulk polymer models and interface models for liquid feed mixtures in contact with the upstream site of the respective membrane have been employed. A comparison between the static structure and the dynamic behavior of the free volume in the simulated flexible chain rubbery polymers and stiff chain glassy polymers reveals qualitative differences which are decisive for experimentally observable differences in the diffusion of small molecules in these materials. The simulation results for the interface models reflect important features of experimentally well characterized pervaporation processes.     

Identifying aspirin polymorphs from combined DFT-based crystal structure prediction and solid-state NMR

A combined experimental and computational approach was used to distinguish between different polymorphs of the pharmaceutical drug aspirin. This method involves the use of ab initio random structure searching (AIRSS), a density functional theory (DFT)-based crystal structure prediction method for the high-accuracy prediction of polymorphic structures, with DFT calculations of nuclear magnetic resonance (NMR) parameters and solid-state NMR experiments at natural abundance. AIRSS was used to predict the crystal structures of form-I and form-II of aspirin. The root-mean-square deviation between experimental and calculated ¹H chemical shifts was used to identify form-I as the polymorph present in the experimental sample, the selection being successful despite the large similarities between the molecular environments in the crystals of the two polymorphs.     

Structure Elucidation and Activity of Kolossin A,the D‐/L‐Pentadecapeptide Product of a Giant Nonribosomal Peptide Synthetase

The largest continuous bacterial nonribosomal peptide synthetase discovered so far is described. It consists of 15 consecutive modules arising from an uninterrupted, fully functional gene in the entomopathogenic bacterium Photorhabdus luminescens. The identification of its cryptic biosynthesis product was achieved by using a combination of genome analysis, promoter exchange, isotopic labeling experiments, and total synthesis of a focused collection of peptide candidates. Although it belongs to the growing class of D ‐/ L ‐peptide natural products, the encoded metabolite kolossin A was found to be largely devoid of antibiotic activity and is likely involved in interspecies communication. A stereoisomer of this peculiar natural product displayed high activity against Trypanosoma brucei rhodesiense, a recalcitrant parasite that causes the deadly disease African sleeping sickness.