Application of a validated stability-indicating chromatographic method to evaluate the reproducibility between batches of small peptides in solution

A stability-indicating reversed-phase high-performance liquid chromatographic method was developed and validated as per the International Conference on Harmonization (ICH) guidelines to evaluate the reproducibility of batches of synthetic peptides included in a stability program, in particular cholecystokinin (CCK-4) peptide.Both isothermal and nonisothermal approaches were used to determine stability under experimental conditions and the resulting degradation products were identified by liquid chromatography-mass spectrometry (LC-MS). The principal degradation product was the cyclic dimer, although another two products derived from it were also detected, due to the loss of one or two Phe-NH₂ residues. The dimerization follows first-order kinetics, whereas the hydrolytic cleavage implies both consecutive and in-parallel processes. The linear Arrhenius plot indicates that the degradation mechanism and kinetics do not change with temperature or the batch, but the degradation rate does depend on the batch, for example, the shelf-life at 25 °C was 2.54 days for batch 3, which is 13-times lower than batch 2. This variability is caused by a change in the synthesis process introduced by the manufacturer.The combination of these two elements: the analytical and stability-evaluating methods provide enough data to establish a stability-indicating profile, as required by the guideline ICH-Q6B for biotechnological/biological products.     

Electrochemical structure‐switching sensing using nanoplasmonic devices

In this article, the implementation of electrochemical plasmonic nanostructures functionalized with DNA‐based structure‐switching sensors is presented. eNanoSPR devices with open and microfluidic measurement cells are developed on the base of nanohole arrays in 100 nm gold film and applied for combined microscopic and electrochemical surface plasmon (eSPR) visualization. eSPR voltammograms and spectroscopy are performed using planar three electrode schematic with plasmonic nanostructure operated as working electrode. Limit of detection of eNanoSPR devices for oligonucleotide hybridization is estimated in the low nanomolar and applications for structure‐switching electro‐plasmonic sensing in complex liquids are discussed.     

Electron Transfer Processes at Aryl‐Modified Glassy Carbon Electrode

The effect of a layer of electrochemically grafted 4‐diazo‐N,N‐diethylaniline (DEA) groups on the electron transfer kinetics of redox systems, displaying fast and slow heterogeneous electron transfer rate constants at edge and basal planes of carbon, was investigated. The properties of the modified electrode were characterized by cyclic voltammetry using four different inorganic redox systems (Fe(CN) , Co(phen) , Ru(NH₃) , and IrCl in acidic, neutral, and basic media. Two distinct blocking behaviors and electrostatic effects were observed. More precisely, a strong blocking effect of the grafted layer on Fe(CN) and Co(phen) was found, whereas Ru(NH₃) and IrCl showed to be rather unaffected by the presence of the DEA grafted layer.     

Copper‐Mediated Coupling of 1,1‐Dibromo‐1‐alkenes with Nitrogen Nucleophiles: A General Method for the Synthesis of Ynamides

Mild reaction conditions are the advantage of the title reaction, which allows straightforward entry to a variety of ynamides starting from readily available 1,1‐dibromo‐1‐alkenes, which act as attractive alkynylating agents (see scheme; EWG=electron‐withdrawing group, DMF=N,N‐dimethylformamide).

     

Quantum mechanical single molecule partition function from path integral Monte Carlo simulations

An algorithm for calculating the partition function of a molecule with the path integral Monte Carlo method is presented. Staged thermodynamic perturbation with respect to a reference harmonic potential is utilized to evaluate the ratio of partition functions. Parallel tempering and a new Monte Carlo estimator for the ratio of partition functions are implemented here to achieve well converged simulations that give an accuracy of 0.04 kcal/mol in the reported free energies. The method is applied to various test systems, including a catalytic system composed of 18 atoms. Absolute free energies calculated by this method lead to corrections as large as 2.6 kcal/mol at 300 K for some of the examples presented.     

An efficient self-consistent field method for large systems of weakly interacting components

An efficient method for removing the self-consistent field (SCF) diagonalization bottleneck is proposed for systems of weakly interacting components. The method is based on the equations of the locally projected SCF for molecular interactions (SCF MI) which utilize absolutely localized nonorthogonal molecular orbitals expanded in local subsets of the atomic basis set. A generalization of direct inversion in the iterative subspace for nonorthogonal molecular orbitals is formulated to increase the rate of convergence of the SCF MI equations. Single Roothaan step perturbative corrections are developed to improve the accuracy of the SCF MI energies. The resulting energies closely reproduce the conventional SCF energy. Extensive test calculations are performed on water clusters up to several hundred molecules. Compared to conventional SCF, speedups of the order of (N/O)2 have been achieved for the diagonalization step, where N is the size of the atomic orbital basis, and O is the number of occupied molecular orbitals.     

On global motions of a compressible barotropic and selfgravitating gas with density-dependent viscosities

We consider the Cauchy problem for the equations of selfgravitating motions of a barotropic gas with density-dependent viscosities μ(ρ), and λ(ρ) satisfying the Bresch–Desjardins condition, when the pressure P(ρ) is not necessarily a monotone function of the density. We prove that this problem admits a global weak solution provided that the adiabatic exponent γ associated with P(ρ) satisfies ${\gamma > \frac{4}{3}}$ .