Synthesis of deoxy sugar esters: a chemoenzymatic stereoselective approach affording deoxy sugar derivatives also in the form of aldehyde

A chemoenzymatic synthesis of deoxy sugar esters is described. The synthesis is based on the O-alkylation of carboxylic acid with 2-bromo-5-acetoxypentanal. The method allows treatment of hydroxy carboxylic acids without protection of alcoholic hydroxyl groups. Several stereoisomeric deoxy sugar esters were resolved (up to ee or de > 98%) using a lipase-catalyzed acetylation of hemiacetals that in certain cases afforded deoxy sugar derivatives in the form of aldehydes. The stereochemistry of the reactions was determined by the NMR spectra of mandelic acid derivatives.     

Lyapunov-Like Solutions to Stability Problems for Discrete-Time Systems on Asymptotically Contractive Sets

This paper presents new criteria for stability properties of discrete-time non-stationary systems. The criteria are based on the concept of asymptotically contractive sets. As a result, general necessary conditions are established for asymptotic stability of the zero equilibrium state, the instantaneous asymptotic stability domain of which can be either time-invariant or time-varying and then possibly asymptotically contractive. It is shown that the classical Lyapunov stability conditions including the invariance principle by LaSalle cannot be applied to the stability test as soon as the system instantaneous domain of asymptotic stability is asymptotically contractive. In order to investigate asymptotic stability of the zero state in such a case novel criteria are established. Under the criteria the total first time difference of a system Lyapunov function may be non-positive only and still can guarantee asymptotic stability of the zero state. The results are illustrated by examples.     

The First Six-Membered “True” Heterocycle – Hydrogen-Bond-Assisted Ladder Formation in a KOCNPS Ring System

A ladder of alternating K₂S₂ and K₂O₂ rings exists in K[Ph₂P(S)NC(O)Ph]⋅MeOH, the first six-membered “true” heterocycle, in the solid state (see picture). A simple P–N bond-forming reaction between benzamide and Ph₂PCl gives the precursor Ph₂P(S)NHC(O)Ph, from which the potassium salt can be generated by reaction with KOtBu.     

Ionic liquid-mediated sol–gel coatings for capillary microextraction

Ionic liquid (IL)-mediated sol–gel hybrid organic–inorganic materials present enormous potential for effective use in analytical microextraction. This opportunity, however, has not yet been explored. One obstacle to materializing this prospect arises from high viscosity of ILs significantly slowing down sol–gel reactions. In this work, we developed a method that overcomes this hurdle and provides IL-mediated advanced sol–gel materials for capillary microextraction (CME). We examined two different ILs: (a) a phosphonium-based IL, trihexyltetradecylphosphonium tetrafluoroborate, and (b) a pyridinium-based ionic liquid, N-butyl-4-methylpyridinium tetrafluoroborate. These ILs were evaluated in conjunction with two types of hydroxy-terminated polymers: (a) two Si–OH terminated polymers (PDMS and BMPO), and (b) two C–OH terminated polymers (PEG and polyTHF) that differ in their sol–gel reactivity. Scanning electron microscopy results demonstrate that ILs can serve as porogenic agents in sol–gel reactions. The IL-mediated sol–gel coatings prepared with silanol-terminated polymers provided up to 28 times higher extractions in off-line CME-GC compared to analogous sol–gel coatings prepared without any IL in the sol solution. Contrary to this, the IL-mediated sol–gel coatings prepared with C–OH terminated polymers provided lower extraction efficiencies compared to their IL-free counterparts. These observations were explained by (a) lower sol–gel reactivity of C–OH groups in PEG and polyTHF compared to Si–OH groups in PDMS and in hydrolyzed alkoxysilane precursors and (b) extremely high viscosity of ionic liquids. This study shows that IL-generated porous morphology alone is not enough to provide effective extraction media: careful choice of the organic polymer and the precursor with close sol–gel reactivity must be made to ensure effective chemical bonding of the organic polymer to the created sol–gel material to be able to provide the desired sorbent characteristics. Additionally, IL-mediated sol–gel PDMS coatings provided run-to-run RSD values of 4.2–5.0% and detection limits ranging from 3.2 ng/L to 17.4 ng/L. PDMS sol–gels prepared without ILs provided RSD values of 2.8–14.1%, and detection limits ranging from 4.9 ng/L to 487.0 ng/L.     

Use of pH electrode for precipitation titration analysis: Theory and practice

A theoretical model for the potentiometric analysis of precipitation titrations using a pH electrode has been developed and tested. The new analytical method is possible by introducing a mediator which must be a weak acid and must be able to form an insoluble salt with a cation (a titrant). Theoretical expressions of pH, as well as the concentrations of all other species, were derived and solved numerically using bisection method. Among the various factors that influence pH during the titration, concentrations of the mediator and initial values of pH were proved to be very critical. The experimental potentiometric titration curves agree well with those predicted from the theoretical model. Crossing point method was adopted to determine an equivalence point from the titration curves. The method is tested using a known system of chloride determination. Among the several mediators tested (bisulfite, chromate, phosphate, cyanide, arsenate and EDTA), phosphate yielded the best results with an error of 0.1%; bisulfite, chromate and arsenate yielded comparably good results with an error of 0.3∼0.5%, but cyanide and EDTA yielded unsatisfactory results. The optimum mediator concentration found to be in a range of 1–2 mM.     

Reactions of alkenes with ozone in the gas phase: a matrix-isolation study of secondary ozonides and carbonyl-containing reaction products

Gas phase ozonolysis reactions of the alkenes ethene, cis- and trans-but-2-ene, isoprene and the monoterpenes alpha-pinene, beta-pinene, beta-carene, limonene and beta-myrcene have been carried out and the reaction products have been trapped in O2-doped-argon matrices onto a Csl window held at 12 K. Products have been identified by IR spectroscopy. Comparison with previous matrix spectra, where secondary ozonides have been generated either in situ by annealing or in solution reactions allows a positive identification of the secondary ozonides of ethene and of cis- and trans-but-2-ene to be made. These observations are backed up by experiments utilising the isotopes 13C and 2H (D). It appears that secondary ozonides have also been formed from isoprene and the range of monoterpenes studied; this hypothesis is based upon the similarity of spectral features seen in the products of these reactions within those of the simpler alkenes. A number of other primary and secondary products are also identified from these reactions. Ethene gives formaldehyde as a primary product and acetaldehyde as a secondary product; it is found that the yield of acetaldehyde compared to formaldehyde increases as the reaction times are increased. Formaldehyde, one of the expected primary products, is formed by ozonolysis of beta-pinene, although the other expected primary product, nopinone, is not seen. A range of secondary reaction products have been identified from the ozonolysis of the monoterpenes studied.     

Using ESI-MS to probe protein structure by site-specific noncovalent attachment of 18-crown-6

A new method for probing the equilibrium structures and folding states of proteins utilizing electrospray ionization mass spectrometry is described. Protein structure is explored as a function of side-chain availability as determined by a specific interaction between lysine and 18-crown-6 ether (18C6). Various intramolecular interactions are competitive with the lysine/18C6 interaction and can prevent noncovalent attachment of 18C6. Changes to protein structure modify these inhibiting intramolecular interactions, which leads to a change in the number of 18C6s that attach to the protein. Experiments conducted with cytochrome c, ubiquitin, and melittin reveal that the method is sensitive to changes in both tertiary and secondary structure. In addition, the structure of each charge state can be examined independently. Experiments can be performed under conditions where the pH and amount of organic cosolvent are varied. Control experiments conducted with pentalysine, which lacks structural organization, are also presented.     

An inhibitor of sequence-specific proteolysis that targets the substrate rather than the enzyme

BACKGROUND: Traditional protease inhibitors target the active site of the enzyme. However, since most proteases act on multiple substrates, even the most specific protease inhibitors will affect the levels of a number of different proteins. However, if substrate-targeted inhibitors could be developed, much higher levels of specificity could be achieved. In theory, compounds that bind the cleavage site of a particular substrate could block its interaction with a protease without having any effect on the processing of other substrates of that protease. RESULTS: A model system is presented that demonstrates the feasibility of substrate-targeted inhibition of proteolysis. A peptide selected genetically to bind a 14-residue epitope that encompasses the cleavage site of human pro-IL-1beta was shown to inhibit interleukin-converting enzyme (ICE)-mediated proteolysis of model substrates containing the 14-mer target sequence. However, the peptide had no effect on the cleavage of other ICE substrates with different amino acids flanking the minimal cleavage site. CONCLUSIONS: This study demonstrates the feasibility of substrate-targeted inhibition of proteolysis. More potent compounds must be developed before substrate-targeted inhibitors can be used routinely. Nonetheless, this novel strategy for protease inhibition seems promising for the development of extremely selective molecules with which to manipulate the maturation of many important pro-hormones, -cytokines and -proteins.