High-precision microcontact printing of interchangeable stamps using an integrated kinematic coupling

Microcontact printing (μCP) is a rapid, inexpensive way to create microscale chemical or biochemical patterns on a target surface. This microstamping method can be used to selectively modify a wide array of surface properties, from wettability and protein adsorption to chemical etch susceptibility. However, controlling the absolute location of features created with microcontact printing is difficult; this lack of precision makes it challenging to integrate with other microfabrication methods or to create complex, multi-chemical patterns on a single surface. In this research, we demonstrate a novel method of controlling the placement of microcontact printing stamps by using an integrated kinematic coupling device. This technique relies on mechanical reference points for rapid, optics-free registry of the stamp and allows μCP stamps to be quickly removed and replaced or even exchanged with submicron repeatability.     

ThX – a next-generation probe for the early detection of amyloid aggregates

Neurodegenerative diseases such as Alzheimer''s and Parkinson''s are associated with protein misfolding and aggregation. Recent studies suggest that the small, rare and heterogeneous oligomeric species, formed early on in the aggregation process, may be a source of cytotoxicity. Thioflavin T (ThT) is currently the gold-standard fluorescent probe for the study of amyloid proteins and aggregation processes. However, the poor photophysical and binding properties of ThT impairs the study of oligomers. To overcome this challenge, we have designed Thioflavin X, (ThX), a next-generation fluorescent probe which displays superior properties; including a 5-fold increase in brightness and 7-fold increase in binding affinity to amyloidogenic proteins. As an extrinsic dye, this can be used to study unique structural amyloid features both in bulk and on a single-aggregate level. Furthermore, ThX can be used as a super-resolution imaging probe in single-molecule localisation microscopy. Finally, the improved optical properties (extinction coefficient, quantum yield and brightness) of ThX can be used to monitor structural differences in oligomeric species, not observed via traditional ThT imaging.

Introducing ThX, a next-generation ThT derivative that allows for the early detection of amyloid aggregates at the bulk and single-aggregate levels.     

On-chip cell lysis by local hydroxide generation

We present a novel method for on-chip cell lysis based on local hydroxide electro-generation. Hydroxide ions porate the cell membrane, leading to cell lysis. After lysis occurs, hydrogen ions, also generated on chip, react with excess hydroxide, creating a neutral pH lysate and eliminating the need for a wash step. Three different cell types are shown to be effectively lysed by this method: red blood cells, HeLa (human tumor line) and Chinese Hamster Ovary (CHO) cell lines. The release of cytoplasmic molecules from HeLa and CHO cells is demonstrated by monitoring the escape of a membrane impermeant dye from the cytoplasm. In the vicinity of the cathode, the hydroxide concentration is predicted by finite element simulations and shown to fit the lysis rates at different distances from the generating cathode. For flow-through experiments, a second device integrating a mechanical filter with hydroxide generation is fabricated and tested. The purpose of the filter is to trap whole cells and only allow lysate to pass through. The flow rate dependence of hydroxide concentration at the lysis filter is modeled and lysis efficiency is experimentally determined to be proportional to the hydroxide concentration for flow rates from 15 to 30 microl min(-1).     

Miniaturized pipette‐tip‐based electrospun polyacrylonitrile nanofibers for the micro‐solid‐phase extraction of nitro‐based explosive compounds

In this study, a self‐assembly of miniaturized pipette‐tip‐based solid‐phase extraction for the simultaneous extraction of nitroaromatic compounds was developed, with electrospun polyacrylonitrile nanofibers used as sorbents. The electrospun polyacrylonitrile nanofibers were characterized by scanning electron microscopy, FTIR analysis and surface area analysis. Good linearities for the four nitroaromatic compounds (2,6‐dinitrotoluene, 2‐nitrotoluene, 3‐nitrotoluene, and 4‐nitrotoluene) were obtained in a range of 250–1000 μg/L with coefficients of determination > 0.99. The limits of detection of these analytes were between 21 and 38 μg/L. The results showed that the pipette‐tip‐based solid‐phase extraction was effective in extracting nitrotoluenes in the pH regime of environmental interest (≈ 6). The investigation also revealed that the optimum mass of electrospun polyacrylonitrile nanofibers sorbent was 15 mg and 20 aspirating/dispensing cycles gave the maximum recovery of nitrotoluenes with 200 μL acetonitrile as the best eluting solvent. Moreover, the performance of the present method was studied for the extraction and determination of nitroaromatic compounds in real environmental water samples and good recoveries ranging from 70 to 115% were found, and respective relative standard deviations of <12% were obtained.     

Local A‐Site Layering in Rare‐Earth Orthochromite Perovskites by Solution Synthesis

Cation size effects were examined in the mixed A‐site perovskites La_0.5Sm_0.5CrO₃ and La_0.5Tb_0.5CrO₃ prepared through both hydrothermal and solid‐state methods. Atomically resolved electron energy loss spectroscopy (EELS) in the transmission electron microscope shows that while the La and Sm cations are randomly distributed, increased cation‐radius variance in La_0.5Tb_0.5CrO₃ results in regions of localised La and Tb layers, an atomic arrangement exclusive to the hydrothermally prepared material. Solid‐state preparation gives lower homogeneity resulting in separate nanoscale regions rich in La³⁺ and Tb³⁺. The A‐site layering in hydrothermal La_0.5Tb_0.5CrO₃ is randomised upon annealing at high temperature, resulting in magnetic behaviour that is dependent on synthesis route.     

Excited States of Xanthene Analogues: Photofragmentation and Calculations by CC2 and Time‐Dependent Density Functional Theory

Action spectroscopy has emerged as an analytical tool to probe excited states in the gas phase. Although comparison of gas‐phase absorption properties with quantum‐chemical calculations is, in principle, straightforward, popular methods often fail to describe many molecules of interest—such as xanthene analogues. We, therefore, face their nano‐ and picosecond laser‐induced photofragmentation with excited‐state computations by using the CC2 method and time‐dependent density functional theory (TDDFT). Whereas the extracted absorption maxima agree with CC2 predictions, the TDDFT excitation energies are blueshifted. Lowering the amount of Hartree–Fock exchange in the DFT functional can reduce this shift but at the cost of changing the nature of the excited state. Additional bandwidth observed in the photofragmentation spectra is rationalized in terms of multiphoton processes. Observed fragmentation from higher‐lying excited states conforms to intense excited‐to‐excited state transitions calculated with CC2. The CC2 method is thus suitable for the comparison with photofragmentation in xanthene analogues.     

Molecular Weight Development of Surface and Solution Polymers in Surface‐Initiated Atom Transfer Radical Polymerization and Their Dependence on Radical Termination Modes

In the surface‐initiated atom transfer radical polymerization, the polymerization proceeds both in solution and on surface. This work reports a modeling study, describing the growth of the molecular weight and polydispersity of polymer both on surface and in solution. It is found that both surface radical termination and solution monomer consumption significantly suppress the growth rate of polymer layer. Besides, the former affects the molecular weights of polymer both on surface and in solution. If the termination rate constant in solution (k_t,sol–sol) is the same as that of surface and solution interfaces (k_t,sol–surf), and the surface termination (k_{t,surf–surf}) is negligible, then the polymers both on surface and in solution have the same molecular weight. However, if surface radicals terminate among themselves, the molecular weight of polymer on surface will lower than that in solution. Such termination is promoted by surface radical migration through activation/deactivation reactions in solution. When k_t,sol–surf <k_t,sol–sol, the molecular weight of surface polymer becomes higher than that in solution. This situation is resulted from surface radical trap due to a high grafting density.

     

Anthracene‐thieno[3,4‐c]pyrrole‐4,6‐dione based donor–acceptor conjugated copolymers for applications in optoelectronic devices

Three novel alternating copolymers of thieno[3,4‐c]pyrrole‐4,6‐dione (TPD) and triisopropylsilylacetylene‐functionalized anthracene were prepared via Suzuki polymerization. Various solubilizing substituents were attached to the TPD moiety in order to ascertain the impact they have upon the optical, electrochemical, and thermal properties of the resulting polymers. All copolymers showed good solubility and thermal stability with decomposition temperatures in excess of 300°C. Optical properties revealed that PTATPD(O), PTATPD(DMO), and PTATPD(BP) displayed optical energy gaps in excess of 2.0 eV. It is speculated that steric repulsion between solubilizing groups on repeat units along polymer chains reduces their planarity and decreases their electronic conjugation. The amorphous nature of the polymers was confirmed with differential scanning calorimetry and powder X‐ray diffraction. The highest occupied molecular orbital levels of the three polymers are unaffected by the different solubilizing chains. However, they exert some influence over the lowest unoccupied molecular orbital (LUMO) levels with PTATPD(BP) and PTATPD(O) displaying the lowest LUMO levels (?3.4 eV). In contrast, PTATPD(DMO) displayed the highest LUMO level (?3.3 eV). © 2015 The Authors. Polymers for Advanced Technologies Published by John Wiley & Sons Ltd.     

Synthesis and biochemical characterisation of fluorinated analogues of pepstatin A and grassystatin A

Pepstatin A and grassystatin A are natural, statine-containing peptides that act as inhibitors of aspartic protease enzymes. In this work, stereoselective fluorination is investigated as a strategy for enhancing the pharmacodynamic and pharmacokinetic properties of these lead compounds. Fluorination is found to modestly affect the protease inhibitory potency, leading to the identification of two highly active new inhibitors of the cancer-associated protease, cathepsin D. However, no dramatic changes are observed in terms of target selectivity, lipophilicity, membrane permeability or metabolic stability.     

Photochemical synthesis of cyclic peptide models from phthalimido acetamides and phthaloyl dipeptide esters

The photochemistry of several phthalimido acetamides and phthaloyl dipeptide esters has been investigated. Their photocyclization ability strongly depended on the substitution pattern of the amide linker group. While secondary amide-derived starting materials were largely unreactive, the corresponding tertiary amide-linked derivatives furnished the desired cyclic peptide model compounds in acceptable to good yields (41–80%). The structurally related ester-linked model derivatives also remained unreactive upon irradiation. Preferential hydrogen-abstraction from the E-cis-substituent is suggested to explain the observed differences in cyclization ability.