Speed of adaptation in structured populations

Adaptation of populations takes place with the occurrence and subsequent fixation of mutations that confer some selective advantage to the individuals which acquire it. For this reason, the study of the process of fixation of advantageous mutations has a long history in the population genetics literature. Particularly, the previous investigations aimed to find out the main evolutionary forces affecting the strength of natural selection in the populations. In the current work, we investigate the dynamics of fixation of beneficial mutations in a subdivided population. The subpopulations (demes) can exchange migrants among their neighbors, in a migration network which is assumed to have either a random graph or a scale-free topology. We have observed that the migration rate drastically affects the dynamics of mutation fixation, despite of the fact that the probability of fixation is invariant on the migration rate, accordingly to Maruyama's conjecture. In addition, we have noticed a topological dependence of the adaptive evolution of the population when clonal interference becomes effective.     

Memory effects in gas chromatographic detection with a microwave-induced plasma

Capillary gas chromatography coupled to microwave-inducedplasma detection furnishes sensitivity adequate for trace analysis when the signal is monitored at a carbon emission line. Work performed with one of these systems at high electronic gain for the carbon signal has revealed solvent band widths in excess of four minutes; these impeded quantification of peaks eluting after the solvent. This report discusses two phenomena which could be related to the unexpected intensity of this solvent response: photomultiplier tube saturation and carbon deposits in the quartz plasma discharge tube.     

The calculation of neutron self-shielding factors of a group of isolated resonances

The resonance neutron self-shielding factor, G _res, is required in neutron metrology and activation data analysis. In a previous paper, the authors have shown that a dimensionless variable can be introduced which converts the dependence of G _res on the physical and nuclear properties of the material samples into an universal curve, valid for the isolated resonances of any nuclide. This work presents a methodology based on the universal curve, which enables to calculate G _res for a group of isolated resonances by weighting its individual contributions. A good agreement was reached with results calculated by the MCNP code and with experimental values for Mo foils and wires. This revised version was published online in July 2006 with corrections to the Cover Date.     

Infrared and Raman spectroscopic investigation of Eu3+-doped mono and Di-urethanesil hybrid siliceous materials

The general features of two series of sol-gel derived materials, designatedurethanesils (Ut), have been investigated by infrared and Raman spectroscopies with the goal of elucidating the chemical environment of the Eu³⁺ cations. The host frameworks of the two families of ormolytes studied have been represented by m-Ut(350) and d-Ut(300), where m stands for mono, d stands for di, 350 and 300 are the average molecular weights of the organic precursors (poly(ethylene glycol) methyl ether, PEGME, and poly(ethylene glycol), PEG, respectively). The hybrid matrix of the mono-xerogels is composed by a siliceous backbone bonded by means of urethane linkages (-NHC (=O)O-) to pendant methyl end capped oligopolymer chains with approximately 7 oxyethylene units, whereas that of the di-xerogels is based on a siliceous network grafted through urethane groups to both ends of poly(oxyethylene) segments containing about 6 (OCH₂CH₂) repeat units. Both classes of materials have been doped with europium triflate (Eu(CF₃SO₃)₃). The doped samples have been identified by m-Ut(350)_nEu(CF₃SO₃)₃ and d-Ut(300)_nEu(CF₃SO₃), where n is the molar ratio of (OCH₂CH₂) repeat units per Eu³⁺ ion. Materials with n ranging from ∞ to 5 have been analyzed. The spectral data obtained provide evidence that the cations begin to coordinate to the ether oxygen atoms of the oligopolymer chains at n=40 in the mono-urethanesils and at n=10 in the di-urethanesils. In mono-urethanesils samples with n>40 and in di-urethanesils materials with n>10, the Eu³⁺ coordinate exclusively to the carbonyl oxygen atoms of the urethane linkages. Paper presented at the 8th EuroConference on Ionics, Carvoeiro, Algarve, Portugal, Sept. 16–22, 2001.     

Investigation of the Doughnut Effect in Cy3-Labeled Protein Microarrays using Scanning Near-Field Optical Microscope

We demonstrate the fluorescence mapping of protein microarrays by the technique of scanning near-field optical microscopy (SNOM) and confocal microscopy. Micron sized spots (300 μm) of human Immunoglobulin G (hIgG) protein with and without a Cy3 dye labeling have been fabricated on glass substrates by an immobilization method which makes use of calixcrown derivatives termed Prolinker. We have also tried to probe into the well-known “doughnut effect” observed in fluorescence images of proteins using the SNOM technique. The topographic and fluorescence SNOM images revealed that the number of proteins at the boundary of the spot were more than at the center in the case of the microarray spot which showed brighter luminescence at the edge than at the center in the confocal image.     

Skeletal Isomerization of <Emphasis Type="Italic">n</Emphasis>-butenes over Solid Acid Catalysts

Conversion reactions of n-butenes over zeolites and amorphous catalysts have been investigated to deduce the factor that determines the selectivity for the skeletal isomerization producing isobutene. The effects of pore structure and acid site concentration on the selectivity for the skeletal isomerization are discussed on various catalysts. The pore structures of FER and CLI zeolites induce the distant locations of butene molecules, accelerating monomolecular skeletal isomerization. On the other hand, acid site concentration determines the preferred reaction path of n-butenes on amorphous catalysts. Oligomerization followed by cracking that produces various hydrocarbons is suppressed on the catalyst with low acid site concentration, resulting in high selectivity for isobutene. The feasibility of monomolecular skeletal isomerization on zeolites and amorphous catalysts is confirmed by its reversibility with high selectivity.     

A novel microporous copper silicate: Na2Cu2Si4O11.2H2O

The synthesis and structural characterisation of a thermally stable novel three-dimensional microporous copper silicate open-framework are described; the material is capable of undergoing reversible zeolitic water removal without destruction of the framework.     

Determination of ionizable groups of proteins by potentiometric titration in concentrated solutions of guanidine hydrochloride

A linearization method based on modified Gran functions, and a general nonlinear regression program were used to study potentiometric titration curves of denatured ovalbumin and lysozyme in 6 mol L^–1 guanidine hydrochloride medium with the aim of determining the ionizable species. With both numerical techniques it was possible to determine the sum of the carboxylic groups, the imidazol, the α-amine, and the sum of ɛ-amine, phenolic and sulfhydryl groups, if the protein is completely denatured, and assumes a randomly coiled conformation. A total of 87.8 ± 2.5 and 20.7 ± 0.6 groups per mol were determined in the ovalbumin and lysozyme, respectively. These values are very close to the 88 and 21 groups expected by aminoacid composition of both proteins, indicating that all ionizable groups were exposed to the solvent. For ovalbumin the distribution of groups was very similar to that expected by the aminoacid composition, but for lysozyme some anomalies were observed, suggesting the existence of interactions between ionizable groups, altering the dissociation constants. Received: 9 December 1996 / Revised: 27 February 1997 / Accepted: 4 March 1997     

Ethanol/water pulp enzymatic pretreatment: Chemical and FTIR-PCA analyses

Pulps obtained from ethanol/water cooking of sugarcane bagasse were treated at different times using xylanase enzyme obtained from Thermomyces lanuginosus IOC-4145 or commercially (Cartazyme HS, Sandoz Products Ltd.). The enzyme dosage was 18 IU per g of dry pulp and the time varied from 4 h to 12 h. When xylanase from T. lanuginosus was used, the kappa number and viscosity improved independently of the processing time used (4 h, 8 h, and 12 h). After chemical evaluation, the obtained pulps were classified using Fourier Transformed Infra-Red Spectroscopy and Principal Component Analysis. The results showed that the first three principal components explained more than 90 % of the total variance of the pulp spectra.