Protein adsorption in fused-silica and polyacrylamide-coated capillaries

The model proteins cytochrome c, myoglobin, ovalbumin, and beta-lactoglobulin were investigated with regard to their adsorption properties on capillaries for electrophoresis. The model compounds were selected to cover a wide range of properties. Cytochrome c is a basic protein (isoelectric point (pI): 9.6; M(r): 11.7 kDa), beta-lactoglobulin is rather acidic (pI: 5.4, M(r): 18.4 kDa), myoglobin was chosen as a neutral reference protein (pI: 6.8-7.4, M(r): 17.8 kDa), and ovalbumin (pI: 5.1, M(r): 45.0 kDa) was selected as a relatively larger analyte. First, the pH dependence of adsorption was investigated for the bare fused silica. A clear correlation to the respective pIs was noted. For myoglobin and ovalbumin, none or negligible adsorption was found above the pI, whereas strong adsorption was noted just below this parameter. Cytochrome c and beta-lactoglobulin already showed distinct adsorption above their pIs. However, none of the proteins showed any significant adsorption more than one pH unit above the pIs. For linear polyacrylamide-coated capillaries, a decreased but not a complete lack of adsorption was observed. Here, pH-dependent adsorption was noted as well. Regeneration of the capillaries by rinsing with buffers containing 200 mM SDS was also investigated. This method was completely successful for myoglobin, but that too for only freshly-adsorbed protein. After a storage time of 24 h and due to the aging of the adsorbate, a sufficient regeneration was no longer possible.     

A density functional theory study on the electrocyclization of 1,2,4,6-heptatetraene analogues: converting a pericyclic to a pseudopericyclic reaction

A comprehensive B3LYP/6-31+G* study on the electrocyclization of 1,2,4,6-heptatetraene analogues was conducted. Starting from the cyclization of (2Z)-2,4,5-hexatrienal, a pericyclic disrotatory process favored by the assistance of a electron lone pair, we incorporated small modifications in its molecular structure to obtain a truly pseudopericyclic process. To this purpose electronegative atoms (fluorine and nitrogen) were added to give a more electrophilic character on the carbon atom which is attacked by the electron lone pair of the oxygen atom. The complete pathway for each reaction was determined, and changes in magnetic properties were monitored with a view to estimating the aromatization associated with each process. This information, together with the energetic and structural results, allowed us to classify the reactions as pseudopericyclic or pericyclic. Among all studied reactions only one was a truly pseudopericyclic process and another was a borderline case. The features of this unequivocally pseudopericyclic case were analyzed in depth.     

Evaluation of different quantitative approaches for the determination of noneasily ionizable molecules by different atmospheric pressure interfaces used in liquid chromatography tandem mass spectrometry: Abamectin as case of study

The liquid chromatography tandem mass spectroscopy residue determination of compounds without any acidic or basic centers such as abamectin has been investigated. Several approaches regarding the interface used and adduct formation have been compared. The low acidity of the hydroxyl groups only made deprotonation feasible using the atmospheric pressure chemical ionization (APCI) interface. To obtain sufficient sensitivity for residue analysis, the Ion Sabre APCI interface was necessary. However, the sensitivity attained was lower than for monitoring adducts in positive ion mode. Using electrospray ionization, different adducts with Na+, NH4+, and Li+ were tested and compared. The best results were obtained for the ammoniated adduct in electrospray ionization (ESI) because of its high sensitivity and the presence of several product ions with similar abundance. The highest sensitivity was reached using an in-source fragment as precursor ion, leading to a limit of detection (LOD) of 2 microg/L with low relative standard deviation. The relatively high abundance of other transitions allowed abamectin confirmation at concentrations close to the LOD (6 microg/L). Alkali ions were found to be a suitable alternative to determine and confirm abamectin at residue levels. The [M + Na]+ also presented various product ions with similar abundance, which allowed confirmation at LOD levels. However, this LOD was found to be almost four times higher than with [M + NH4]+ because of the poor sensitivity of the transitions obtained. Although the use of Li+ facilitated the fragmentation of the adduct [M + Li]+, with similar sensitivity to [M + NH4]+, this fragmentation preferentially generated only one product ion, which did not allow confirmation at concentration levels lower than 15 microg/L. The use of APCI for monitoring adducts was also feasible, but with less sensitivity. The sensitivity increased with the Ion Sabre APCI, although it was still five times lower than with ESI. Other adduct formers such as Co2+ and Ni2+ also were tested with unsatisfactory results.     

Considerations on the modelling and optimisation of resolution of ionisable compounds in extended pH-range columns

The problems associated to the modelling and optimisation of the chromatographic resolution of mixtures involving ionisable solutes at varying pH and acetonitrile content are discussed. Several retention models that separate the contributions of solute, column and stationary phase, were used. The retention was predicted with low errors in large pH domains (2-12), which was an essential requirement to face the optimisation of resolution. The selected mixture was particularly problematic under the viewpoint of resolution, owing to the excessively diverse acid-base behaviour of solutes. This variety led to sudden drops in retention at different pH for each solute, yielding numerous peak crossing, which made finding shared regions of high resolution especially difficult. Conventional resolution diagrams for these situations are scarcely informative, since both the overall and the worst elementary resolutions drop to zero if at least two compounds remain overlapped, even when all the others are baseline resolved. A new chromatographic objective function is proposed to address this drawback. This function, called "limiting peak count", is based on the limiting peak purity concept, and measures the success in the resolution focusing on the resolved solutes, in contrast to conventional resolution assessments that attend mainly to the least resolved solutes. Limiting peak count yields the same result as conventional assessments when full resolution is possible, but it is also able to discriminate the maximal resolving power in low-resolution situations. It offers a different perspective to that given by the complementary mobile phases approach, and the computation is far simpler.     

Structure of the liquid-vapor interface of water-methanol mixtures as seen from Monte Carlo simulations

Monte Carlo simulation of the vapor-liquid interface of water-methanol mixtures of different compositions, ranging from pure water to pure methanol, have been performed on the canonical (N, V, T) ensemble at 298 K. The analysis of the systems simulated has revealed that the interface is characterized by a double layer structure: methanol is strongly adsorbed at the vapor side of the interface, whereas this adsorption layer is followed at its liquid side by a depletion layer of methanol of lower concentration than in the bulk liquid phase of the system. The dominant feature of the interface has been found to be the adsorption layer in systems of methanol mole fractions below 0.2, and the depletion layer in systems of methanol mole fractions between 0.25 and 0.5. The orientation of the molecules located at the depletion layer is found to be already uncorrelated with the interface, whereas the methanol molecules of the adsorption layer prefer to align perpendicular to the interface, pointing straight toward the vapor phase by their methyl group. Although both the preference of the molecular plane for a perpendicular alignment with the interface and the preference of the methyl group for pointing straight to the vapor phase are found to be rather weak, the preference of the methyl group for pointing as straight toward the vapor phase as possible within the constraint imposed by the orientation of the molecular plane is found to be fairly strong. One of the two preferred orientations of the interfacial water molecules present in the neat system is found to disappear in the presence of methanol, because methanol molecules aligned in their preferred orientation can replace these water molecules in the hydrogen-bonding pattern of the interface.     

Synthesis of isomeric β-haloethylthienopyrroles

The preparation of ethyl 4-(2-bromoethyl)thieno[2,3-b]pyrrole-5-carboxylate and ethyl 6-(2-bromoethyl)thieno[3,2-b]pyrrole-5-carboxylate by reaction of t-butyl 2-(2-thienyl)carbazate and t-butyl 2-(3-thienyl)carbazate with ethyl-5-bromo-2-oxopentanoate are described.     

Study of the interferences in the determination of Pu, Am and Cm in radioactive waste by extraction chromatography

This paper describes the experimental studies carried out to determine (238)Pu, (239/40)Pu, (241)Pu, (241)Am, (242)Cm and (244)Cm in samples from nuclear power plants (mainly spent ion exchange resins and evaporator concentrates) using an organophosphorus compound immobilized on an inert support. These materials are commercially available under the name TRU Resin (for Transuranium Specific) from Eichrom Industries, Darien, IL. An attempt is made to develop a rapid, accurate method of analysis, with minimum waste generation. Standard solutions of Pu and Am and one sample of spent ion exchange resin that contains fission, activation products, Pu, Am and Cm were analyzed to study the separation factors and interferences in the measurement of Pu, Am and Cm isotopes.     

Selectivity of Several Liquid Phases for the Separation of Pine Terpenes by Gas Chromatography

Chromatographic retention data and thermodynamic properties of six pine terpenes (α-pinene, β-pinene, camphene, limonene, α-phellandrene and p-cymene) on six different liquid phases, with a wide range of polarity, are reported at temperatures from 80 to 120 °C. The retention behaviour and selectivity of liquid phases for the separation of binary solute systems are discussed in terms of activity coefficients and specific interactions. Solubility parameters for the liquid phases are reported using the regular solution theory and the Takamiya equation and a good correlation between polarity and solubility parameters is observed.     

Combining thermal analysis with other techniques to monitor the decomposition of poly(m-phenylene isophthalamide)

The pyrolysis behaviour of Nomex, poly(m-phenylene isophthalamide) fibres under argon has been investigated up to a temperature of 1173 K with different methods to get direct information on the progressive changes taking place in the solid material and its carbon fibre residues. The main stages of the pyrolytic degradation of the fibres were determined by thermal analysis (TG and DTA) and their chemical and morphological evolution through the different steps was subsequently followed by Fourier transform infrared spectroscopy (FTIR) and atomic force microscopy (AFM) measurements, respectively, on samples treated to various temperatures. This revised version was published online in July 2006 with corrections to the Cover Date.     

Liquid chromatography of carbon clusters

Summary A comparison of three binary mobile phases in LC separation of C₆₀ and C₇₀ fullerences on chemically bonded 2,4-dinitroanilinopropyl (DNAP) stationary phase was carried out, n-Hexane-benzene has been found to be the best mobile phase for efficient separation of the all-carbon molecules permitting high loads in preparative LC.