A stereochemical surprise at the late stage of the synthesis of fully N-differentiated heparin oligosaccharides containing amino, acetamido, and N-sulfonate groups

The glucosamine residues in heparin-like glycosaminoglycans have been found to exist as amines, acetamides, and N-sulfonates. To develop a completely general, modular synthesis of heparin, three degrees of orthogonal nitrogen protection are required. Reported herein is a strategy for the synthesis of fully N-differentiated heparin oligosaccharides in the context of target octasaccharide 1, which contains an N-acetate, N-sulfonates, and a free amine. The protecting group scheme used in the synthesis blocked the N-acetate as a N-diacetate, the N-sulfonates as azido groups, and the amine as a N-CBz; free hydroxyls were masked as benzyl ethers and O-sulfonates as acetate esters. Disaccharide and tetrasaccharide modules were synthesized using this strategy; however, the union of tetrasaccharide trichloroacetimidate 4 with disaccharide acceptor 5 unexpectedly formed the undesired beta-linked glycoside in addition to the alpha-linkage anticipated for iduronic acid nucleophiles, resulting in an inseparable 6:1 alpha/beta mixture of products. Detailed studies into the basis for this unexpected result were conducted and are also reported.     

Analysis of Hanford-Related Organics Using Matrix-Assisted Laser Desorption Ionization Time-Of-Flight Mass Spectrometry

Matrix-assisted laser desorption/ionization coupled with time-of-flight mass spectrometry (MALDI/TOF-MS) was used for the analysis of low-molecular phosphate compounds found in Hanford tank wastes. The mass spectra of these compounds indicate protonated peaks as well as sodium adducts. Analytical methods presently utilized for the analysis of the phosphate-related organics are both time consuming and labor intensive. A promising alternative is MALDI/TOFMS. The MALDI process produces both positive and negative ions directly and very little sample is required. In addition, there is limited sample preparation and minimal hazardous waste production.     

Catalytic proficiency: the extreme case of S-O cleaving sulfatases

As benchmarks for judging the catalytic power of sulfate monoesterases, we sought to determine the rates of spontaneous hydrolysis of unactivated alkyl sulfate monoesters by S-O bond cleavage. Neopentyl sulfate proved to be unsuitable for this purpose, since it was found to undergo hydrolysis by a C-O bond cleaving mechanism with rearrangement of its carbon skeleton. Instead, we examined the temperature dependence of the spontaneous hydrolyses of aryl sulfate monoesters, which proceed by S-O cleavage. Extrapolation of a Bronsted plot [log(k(25)(N)) = (-1.81 ± 0.09) pK(a)(LG) + (3.6 ± 0.7)] based on the rate constants at 25 °C for hydrolysis of a series of sulfate monoesters to a pK(a)(LG) value of 16.1, typical of an aliphatic alcohol, yields k(25)(N) = 3 × 10(-26) s(-1). Comparison of that value with established k(cat) values of bacterial sulfatases indicates that these enzymes produce rate enhancements (k(cat)/k(uncat)) of up to 2 × 10(26)-fold for the hydrolysis of sulfate monoesters. These rate enhancements surpass by several orders of magnitude the ~10(21)-fold rate enhancements that are generated by phosphohydrolases, the most powerful biological catalysts previously known. The hydrolytic rates of phosphate and sulfate monoesters are compared directly, and the misleading impression that the two classes of ester are of similar reactivity is dispelled.     

Hydrolysis of N-alkyl sulfamates and the catalytic efficiency of an S-N cleaving sulfamidase

The final step in the degradation of heparin sulfate involves the enzymatic hydrolysis of its 2-sulfamido groups. To evaluate the power of the corresponding sulfamidases as catalysts, we examined the reaction of N-neopentyl sulfamate at elevated temperatures and found it to undergo specific acid catalyzed hydrolysis even at alkaline pH. A rate constant of 10(-16) s(-1) was calculated using the Eyring equation for water attack on the N-protonated species at pH 7, 25 °C. As a model for the pH neutral reaction, a rate constant for hydroxide attack on (CH(3))(3)CCH(2)N(+)H(2)SO(3)(-) at pH 7, 25 °C was calculated to be 10(-19) s(-1). The corresponding rate enhancement (k(cat)/k(non)) produced by the N-sulfamidase of F. heparinum is approximately 10(16)-fold, which is somewhat larger than those generated by most hydrolytic enzymes but considerably smaller than those generated by S-O cleaving sulfatases.     

The effect of fluorinated terminal chains on the mesomorphic properties of 4,4'-disubstituted phenyl benzoates

A variety of 4,4'-disubstituted phenyl benzoates having a terminal chain containing multifluorine atoms, attached directly to the benzene ring or through an ester group, have been synthesized and their mesomorphic properties determined by hot stage polarizing optical microscopy. These properties were compared to those of the corresponding hydrogenated esters and to other esters containing rigid terminal chains. Usually transition temperatures were higher and mesophase ranges wider than those observed for the parent compounds but no nematic phases were found. Any mesophase seen was usually a smectic A phase sometimes accompanied by a smectic C phase. Crystal E phases were found along with the smectic A phase in alkyl or alkoxy esters having a C₉F₁₉CO₂ chain on the acid side. A first order smectic A-smectic C transition was observed in the ester with CN on the acid side and O₂CC₇F₁₅ on the phenol side. A comparison of the effect of a terminal fluorinated chain and a lateral fluorine group on one set of esters is also included.     

The effect of terminal chain modifications on the mesomorphic properties of 4,4'-disubstituted diphenyldiacetylenes

A variety of terminal chain modifications (Y) were made on the diacetylenes in which X=C_nH_2n+1, C₁₂H₂₅O and F, and Y=CH₂CH(Me)C₂H₅, COCH₃, C≡CC₅H₁₁, C_nF_2n+1C_nH_2n+1 and CH=CHCO₂C₃H₇. Mesomorphic properties were determined by hot stage polarizing microscopy and DSC. These were compared with those for the dialkyl analogues (X=C_mH_2m+1, Y=C_nH_2n+1) and a series of 1- and 2-olefins (Y=CH=CHC_nH_2n+1 and CH₂CH=CHC_nH_2n+1). The 1-olefin series showed wider range nematics than the dialkyl compounds, whereas the above modifications showed either narrow range nematic phases, no mesophase or higher melting temperatures. New transition temperature and enthalpy data are provided for some of the dialkyl and F-alkyl compounds previously reported, for comparisons. Preliminary birefringence data are also included along with the results of some heat and UV stability studies.     

Probing signal amplification by reversible exchange using an NMR flow system

Hyperpolarization methods are used in NMR to overcome its inherent sensitivity problem. Herein, the biologically relevant target nicotinamide is polarized by the hyperpolarization technique signal amplification by reversible exchange. We illustrate how the polarization transfer field, and the concentrations of parahydrogen, the polarization‐transfer‐catalyst and substrate can be used to maximize signal amplification by reversible exchange effectiveness by reference to the first‐order spin system of this target. The catalyst is shown to be crucial in this process, first by facilitating the transfer of hyperpolarization from parahydrogen to nicotinamide and then by depleting the resulting polarized states through further interaction. The 15 longitudinal one, two, three and four spin order terms produced are rigorously identified and quantified using an automated flow apparatus in conjunction with NMR pulse sequences based on the only parahydrogen spectroscopy protocol. The rates of build‐up of these terms were shown to follow the order four~three > two > single spin; this order parallels their rates of relaxation. The result of these competing effects is that the less‐efficiently formed single‐spin order terms dominate at the point of measurement with the two‐spin terms having amplitudes that are an order of magnitude lower. We also complete further measurements to demonstrate that ¹³C NMR spectra can be readily collected where the long‐lived quaternary ¹³C signals appear with significant intensity. These are improved upon by using INEPT. In summary, we dissect the complexity of this method, highlighting its benefits to the NMR community and its applicability for high‐sensitivity magnetic resonance imaging detection in the future. © 2014 The Authors. Magnetic Resonance in Chemistry by John Wiley & Sons, Ltd.     

The missing C-17 O-methyltransferase in geldanamycin biosynthesis

The biosynthetic gene clusters for the Hsp90 inhibitor geldanamycin (GDM, 1) have been cloned previously from three different Streptomyces strains, but the gene encoding the C-17 O-methyltransferase remains unknown. The cloning and sequencing of a new GDM biosynthetic gene cluster from Streptomyces autolyticus CGMCC 0516 was reported, identifying the gdmMT gene that encodes the missing C-17 O-methyltransferase for 1 biosynthesis.     

Improving on Nature: Making a Cyclic Heptapeptide Orally Bioavailable

The use of peptides in medicine is limited by low membrane permeability, metabolic instability, high clearance, and negligible oral bioavailability. The prediction of oral bioavailability of drugs relies on physicochemical properties that favor passive permeability and oxidative metabolic stability, but these may not be useful for peptides. Here we investigate effects of heterocyclic constraints, intramolecular hydrogen bonds, and side chains on the oral bioavailability of cyclic heptapeptides. NMR‐derived structures, amide H–D exchange rates, and temperature‐dependent chemical shifts showed that the combination of rigidification, stronger hydrogen bonds, and solvent shielding by branched side chains enhances the oral bioavailability of cyclic heptapeptides in rats without the need for N‐methylation.