Clumping Data in 2-Way Tables: A User-Orientated Perspective

Following a critique of existing algorithms, an algorithm is presented which will re-organize a 2-way data table to bring like rows together, and like columns together. Extensions of the method are described, and justified, to accommodate distances measured in modular arithmetic, and with bipolar columns/rows, as in repertory grid analysis. One value of the algorithms is that the user can see relationships in the tables without the data in the cells themselves ever having been transformed. Thus, users will continue to feel they own their data.     

A unique reversal of elution order during direct enantiomeric resolution of amide derivatives of 1-phenyl-2-aminopropane by high performance liquid chromatography on chiral stationary phases

Enantiomeric amide derivatives of (S)- and (R)-1-phenyl-2-aminopropane (dextro- and levoamphetamine, respectively) were resolved by high performance liquid chromatography on commercially available ionically and covalently bonded chiral stationary phases ((R)-N-(3,5-dinitrobenzoyl)phenylglycine). Ten enantiomeric amide pairs were synthesized and chromatographed on the columns by using a mobile phase of hexane-isopropanol (97 : 3), a flow rate of 2 ml/min, and a column temperature of 20°C. The (R)-isomer of all 10 amides eluted first on the covalent column as did the (R)-isomer of nine derivatives on the ionic column. however, the 3,5-dinitrobenzoyl amide of (S)- amphetamine eluted before the (R)-isomer on the ionic column. This reversal in enantiomeric elution order reveals the complexity of the interactions occurring on these columns and emphasizes the hazards of relying on observed elution order as an a priori indication of absolute configuration.     

Applied potential and radiotracer studies on poly(vinyl chloride) matrix ion-selective electrode membranes

This paper reports the effect of applied potentials on PVC matrix membranes containing (i) the barium ion-sensitive barium-Antarox C0880 complex and 2-nitrophenyl phenyl ether solvent mediator, and (ii) the calcium ion-sensitive Orion 92-20-02 phosphate-based calcium liquid ion-exchanger. Platinum electrodes were placed in solutions on each side of the membranes. The barium ion-sensitive membranes are unable to maintain stable current flows but the calcium ion-sensitive membranes are characterized by stable current flows over prolonged periods even after successive polarity reversals. Results are presented, from radiotracer experiments for permeation of ions through the membranes with and without an applied potential. No evidence was found for significant permeation of barium-133 ions through the barium ion-sensing membranes into an initially inactive solution, but it was found that barium-133 ions were incorporated into the membranes after removal of the applied potential. Permeation of sodium-22 ions through the calcium ion-sensing membranes occurred only to a limited extent in the presence of an applied potential and not at all in its absence, confirming electrode selectivity trends for calcium and sodium. Calcium-45 ions did not permeate the calcium ion-sensing membranes into an inactive counter-solution against the potential gradient, but on reversal of the polarity, permeation occurred to a far greater extent than in the absence of an applied potential. These differences in behaviour are compatible with the more complicated membrane pathways of the barium ion-sensing membranes, imposed by the complexing of barium ions by the ethyleneoxy units of Antarox C0880 in a tight helical conformation. The calcium ion-sensing membranes are much less constrained, thus permitting more facile replacement of the calcium ions in the membrane by ions from solution.     

Automatic mass spectrometry method development for drug discovery: application in metabolic stability assays

High-throughput metabolic screening has been requested routinely to keep pace with high-throughput organic synthesis. Liquid chromatography/tandem mass spectrometry (LC/MS/MS) with a fast gradient has become the method of choice for the task due to its sensitivity and selectivity. We have developed an automated system that consists of a robotic system for in vitro incubation and a commercially available software package for automatic MS/MS method development. A short, generic LC gradient and MS conditions that are applicable to most compounds have been developed to minimize the method development time and data analysis. This system has been used to support a number of in vitro screening assays in early drug discovery phase including microsomal stability and protein binding.     

Characterization of acridone dyes for use in four-decay detection in DNA sequencing

Four acridone dyes and dye-labeled primers were characterized for use in four-decay DNA sequencing. In the four-decay scheme, fluorescence lifetime replaces spectral ("color") selectivity for distinguishing between four base-specific labels in a single-lane capillary electrophoresis (CE) separation of the DNA fragments. Prior to the introduction of the acridone dyes, a major obstacle to four-decay detection was the lack of four suitable dyes with resolvable lifetimes. The four acridone dyes, whether free in solution or tethered to DNA primer, exhibit significant differences among their lifetimes and are well-suited to use together in four-decay sequencing. The lifetimes of the four dye-labeled DNA primers that were sequentially injected and detected on-the-fly in a 2% POP6 sequencing gel were 4, 6, 11 and 14 ns. A 405 nm violet laser diode provides optimal excitation of the four dyes.     

Use of an automated image processing program to quantify recombinant adenovirus particles.

Electron microscopy has a pivotal role as an analytical tool in pharmaceutical research. However, digital image data have proven to be too large for efficient quantitative analysis. We describe here the development and application of an automated image processing (AIP) program that rapidly quantifies shape measurements of recombinant adenovirus (rAd) obtained from digitized field emission scanning electron microscope (FESEM) images. The program was written using the macro-recording features within Image-Pro Plus software. The macro program, which is linked to a Microsoft Excel spreadsheet, consists of a series of subroutines designed to automatically measure rAd vector objects from the FESEM images. The application and utility of this macro program has enabled us to rapidly and efficiently analyze very large data sets of rAd samples while minimizing operator time.