On the Use of Accelerated Molecular Dynamics to Enhance Configurational Sampling in Ab Initio Simulations

We have implemented the accelerated molecular dynamics approach (Hamelberg, D.; Mongan, J.; McCammon, J. A. J. Chem. Phys. 2004, 120 (24), 11919) in the framework of ab initio MD (AIMD). Using three simple examples, we demonstrate that accelerated AIMD (A-AIMD) can be used to accelerate solvent relaxation in AIMD simulations and facilitate the detection of reaction coordinates: (i) We show, for one cyclohexane molecule in the gas phase, that the method can be used to accelerate the rate of the chair-to-chair interconversion by a factor of ～1 × 10(5), while allowing for the reconstruction of the correct canonical distribution of low-energy states; (ii) We then show, for a water box of 64 H(2)O molecules, that A-AIMD can also be used in the condensed phase to accelerate the sampling of water conformations, without affecting the structural properties of the solvent; and (iii) The method is then used to compute the potential of mean force (PMF) for the dissociation of Na-Cl in water, accelerating the convergence by a factor of ～3-4 compared to conventional AIMD simulations.(2) These results suggest that A-AIMD is a useful addition to existing methods for enhanced conformational and phase-space sampling in solution. While the method does not make the use of collective variables superfluous, it also does not require the user to define a set of collective variables that can capture all the low-energy minima on the potential energy surface. This property may prove very useful when dealing with highly complex multidimensional systems that require a quantum mechanical treatment.     

Consecutive three-component synthesis of 3-(hetero)aryl-1H-pyrazoles with propynal diethylacetal as a three-carbon building block

A novel consecutive three-component synthesis of 3-(hetero)aryl-1H-pyrazoles via room temperature Sonogashira arylation of propynal diethylacetal used as a propargyl aldehyde synthetic equivalent has been disclosed. The final acetal cleavage-cyclocondensation with hydrazine hydrochloride at 80 °C rapidly furnishes the title compounds in a one-pot fashion.     

Active transport in complex media: Relationship between persistence and superdiffusion

We study the relationship between anomalous diffusion and persistent motion of micron-sized particles moving in a viscoelastic environment and subjected to an external noise. In the framework of a generalized Langevin equation, we compare the analytical expressions of the mean square displacement and the mean cosine of the turning angle. Both magnitudes can be easily computed from the particles trajectories, and allow us to investigate the different anomalous regimes typically obtained, for instance, in single particle tracking experiments within living cells. Finally, we analyze the directional changes occurring during the motion of pigment organelles driven by molecular motors in Xenopus laevis melanocytes, as an example of application of our model.     

Phase diagram of Mg insertion into Chevrel phases, MgxMo6T8 (T = S, Se). 3. The crystal structure of triclinic Mg2Mo6Se8

This series of papers is devoted to unique cathode materials for Mg batteries, MgxMo6T8 (T = S, Se, x = 1 and 2) Chevrel phases (CPs). In this part, a combination of neutron and high-resolution synchrotron X-ray diffractions was used to study the crystal structure of Mg2Mo6Se8, which is triclinic at room temperature (space group P1, a = 6.868 A, b = 6.921 A, c = 6.880 A, alpha = 93.00 degrees , beta = 94.40 degrees , gamma = 96.22 degrees ). In contrast to other members of the MgxMo6T8 family, this compound does not follow the classic scheme of successive cation insertion into so-called inner and outer sites: Both the Mg(2+) ions per formula are located in the tetrahedral sites of the outer ring. This surprising cation location, predicted previously for Mg-containing CPs by ab initio calculations, provides the uniform distribution of the cation charge in the triclinic structure, which is similar to that of rhombohedral CPs. A mapping of the cation sites was widely used to demonstrate the variety of cation arrangement in CPs and the factors affecting this arrangement, as well as to clarify the origin of the exceptionally high mobility of the Mg(2+) ions in Mg2Mo6Se8.     

UV-Vis-NIR spectroelectrochemical and in situ conductance studies of unusual stability of n- and p-doped poly(dimethyldioctylquaterthiophene-alt-oxadiazole) under high cathodic and anodic polarizations

Combined CV studies and UV-Vis-NIR spectroelectrochemical investigations revealed an unusual stability of the p- and n-doped PMOThOD in the wide potential window of 4 V. The n-doping process occurs in this polymer down to -2.7 V (vs. Ag/Ag+) in a non-destructive way with the characteristic development of the omega3 transition as a function of the doping level. In situ electronic transport studies revealed a high conductivity of the n-doped polymer which implies high mobility of the negatively charged carriers in the freshly doped PMOThOD film electrodes. An increase in the cathodic polarization, long-term cycling of the film electrodes, especially of higher thickness, results in a growing contribution of the negatively charged carriers trapping to the redox properties of the PMOThOD. The trapping of the charged carriers reduces gradually the electronic conductance of the PMOThOD film, but its effect on the redox-capacity of the film (in a typical scan rates range up to 50 mV s(-1)) is only minor.     

Single-atom optical clock with high accuracy

For the past 50 years, atomic standards based on the frequency of the cesium ground-state hyperfine transition have been the most accurate time pieces in the world. We now report a comparison between the cesium fountain standard NIST-F1, which has been evaluated with an inaccuracy of about 4 x 10(-16), and an optical frequency standard based on an ultraviolet transition in a single, laser-cooled mercury ion for which the fractional systematic frequency uncertainty was below 7.2 x 10(-17). The absolute frequency of the transition was measured versus cesium to be 1,064,721,609,899,144.94 (97) Hz, with a statistically limited total fractional uncertainty of 9.1 x 10(-16) the most accurate absolute measurement of an optical frequency to date.     

CsF-promoted acetyl dance at the narrow rim of p-tert-butyl[3.1.3.1]homooxacalixarene

In the acetylation of an oxygenated calix[4]arene homologue in the presence of CsF as a base, relaxation of the reaction system to the equilibrium composition takes place through several intra- and intermolecular steps that can be easily controlled to obtain the various acetyl derivatives. The effect of different bases is also discussed.     

Polyimide Compounds For Post-Lithium Energy Storage Applications

The exploration of cathode and anode materials that enable reversible storage of mono and multivalent cations has driven extensive research on organic compounds. In this regard, polyimide (PI)-based electrodes have emerged as a promising avenue for the development of post-lithium energy storage systems. This review article provides a comprehensive summary of the syntheses, characterizations, and applications of PI compounds as electrode materials capable of hosting a wide range of cations. Furthermore, the review also delves into the advancements in PI based solid state batteries, PI-based separators, current collectors, and their effectiveness as polymeric binders. By highlighting the key findings in these areas, this review aims at contributing to the understanding and advancement of PI-based structures paving the way for the next generation of energy storage systems.     

Riesz Transform for a Flow Laplacian on Homogeneous Trees

Journal of Fourier Analysis and Applications - We introduce and study the notion of weak semi-greedy systems—which is inspired in the concepts of semi-greedy and branch semi-greedy systems...