Structure elucidation of glycoproteins by direct nanoESI MS and MS/MS analysis of proteolytic glycopeptides

Bovine ribonuclease B (RNAse B) and asialofetuin (FETUA) were subjected to in-capillary tryptic digest (Pohlentz et al. Proteomics. 2005, 5, 1758-1763) and the obtained glycopeptides were analyzed, respectively, by nanoelectrospray ionization mass spectrometry and collision-induced dissociation (CID) during the ongoing digest. For RNAse, B glycans of the high-mannose type (Man(4) to Man(9)) attached to either a tetra- or a hexapeptide containing the sole N-glycosylation site of the protein were detected. Glycopeptides derived from all three N-glycosylation sites of FETUA were observed, and the corresponding CID spectra proved the respective glycans to be oligosaccharides of the triantennary complex type. Moreover, an O-glycopeptide carrying Gal-GalNAc at T(280) could be unambiguously identified. An in-solution tryptic/chymotryptic digest of human transferrin (TRFE) was analyzed directly for glycopeptides subsequent to the addition of methanol and formic acid. Disialylated diantennary glycans were observed in glycopeptides of both N-glycosylation sites of TRFE. These results demonstrate the feasibility of direct structure determination of glycopeptides in proteolytic mixtures without any further refurbishment.     

Effects of graphene and carbon nanotube fillers on the shear properties of epoxy

The effects of quantity of graphene and carbon nanotube‐based fillers and their pendant functional groups on the shear properties of a thermoset epoxy were investigated. Two novel functionalized graphenes, one with epoxy functionality and the other with an amine, are synthesized for this purpose. Nanocomposites are prepared at concentrations of 0.5, 1, 2, 3, 5, and 10 wt % and the effects of functionalization on the homogeneity of dispersion and the shear mechanical properties are investigated. The properties of the epoxy nanocomposites containing epoxy‐ and amine‐functionalized graphene are compared with those containing graphene oxide, Claisen‐functionalized graphene, neat multiwalled carbon nanotubes (MWNTs), three types of epoxy‐functionalized MWNT (EpCNT), and the unfilled epoxy. One of the EpCNT ( EpCNT3 ) was found to increase the plateau shear storage modulus by 136% (1.67–3.94 MPa) and the corresponding loss modulus by almost 400% at a concentration of 10 wt %. Several other fillers were also found to increase shear properties at certain concentrations. A hybrid system of EpCNT3 and graphite was also studied, which improved the storage modulus by up to 51%. SEM images reveal a correlation between thorough dispersion of the additive and enhancement of shear modulus. © 2013 Wiley Periodicals, Inc. J. Polym. Sci., Part B: Polym. Phys. 2013 , 51, 997–1006     

N2O concentration and isotope signature along profiles provide deeper insight into the fate of N2O in soils†

Nitrous oxide is an important greenhouse gas and its origin and fate are thus of broad interest. Most studies on emissions of nitrous oxide from soils focused on fluxes between soil and atmosphere and hence represent an integration of physical and biological processes at different depths of a soil profile. Analysis of N₂O concentration and isotope signature along soil profiles was suggested to improve the localisation of sources and sinks in soils as well as underlying processes and could therefore extend our knowledge on processes affecting surface N₂O fluxes. Such a mechanistic understanding would be desirable to improve N₂O mitigation strategies and global N₂O budgets. To investigate N₂O dynamics within soil profiles of two contrasting (semi)natural ecosystem types (a temperate acidic fen and a Norway spruce forest), soil gas samplers were constructed to meet the different requirements of a water-saturated and an unsaturated soil, respectively. The samplers were installed in three replicates and allowed soil gas sampling from six different soil depths. We analysed soil air for N₂O concentration and isotope composition and calculated N₂O net turnover using a mass balance approach and considering diffusive fluxes. At the fen site, N₂O was mainly produced in 30–50 cm soil depth. Diffusion to adjacent layers above and below indicated N₂O consumption. Values of δ¹⁵N and δ¹⁸O of N₂O in the fen soil were always linearly correlated and their qualitative changes within the profile corresponded with the calculated turnover processes, suggesting further reduction of N₂O. In the spruce forest, highest N₂O production occurred in the topsoil, but there was also notable production occurring in the subsoil at a depth of 70 cm. Changes in N₂O isotope composition as to be expected from local production and consumption processes within the soil profile did hardly occur, though. This was presumably caused by high diffusive fluxes and comparatively low net turnover, as isotope signatures approached values measured for ambient N₂O towards the topsoil. Our results demonstrate a highly variable influence of diffusive versus production/consumption processes on N₂O concentration and isotope composition, depending on the type of ecosystem. This finding indicates the necessity of further N₂O concentration and isotope profile investigations in different types of natural and anthropogenic ecosystems in order to generalise our mechanistic understanding of N₂O exchange between soil and atmosphere.