Lamellar structure in poly(ala-gly) determined by solid-state NMR and statistical mechanical calculations

Lamellar structure of poly(Ala-Gly) or (AG)n in the solid was examined using 13C solid-state NMR and statistical mechanical approaches. Two doubly labeled versions, [1-13C]Gly14[1-13C]Ala15- and [1-13C]Gly18[1-13C]Ala19 of (AG)15 were examined by two-dimensional (2D) 13C spin diffusion NMR in the solid state. In addition five doubly labeled [15N,13C]-versions of the same peptide, (AG) 15 and 15 versions labeled [3-13C] in each of the successive Ala residues were utilized for REDOR and 13C CP/MAS NMR measurements, respectively. The observed spin diffusion NMR spectra were consistent with a structure containing a combination of distorted beta-turns with a large distribution of the torsion angles and antiparallel beta-sheets. The relative proportion of the distorted beta-turn form was evaluated by examination of 13C CP/MAS NMR spectra of [3-13C]Ala-(AG)15. In addition, REDOR determinations showed five kinds of atomic distances between doubly labeled 13C and 15N nuclei which were also interpreted in terms of a combination of beta-sheets and beta-turns. Our statistical mechanical analysis is in excellent agreement with our Ala Cbeta 13C CP/MAS NMR data strongly suggesting that (AG)15 has a lamellar structure.     

DNA and RNA noncovalent interaction of platinum(II) polypyridine complexes

A comparative investigation of the noncovalent interaction of the platinum(II) polypyridine complexes [Pt(dipy)(n-Rpy)2]2+ and [Pt(4,4'-Me2dipy)(2-Rpy)2]2+ (dipy = 2,2'-dipyridine; Me = CH3; n = 2-4; R = H or CH3) with double-helical DNA (calf thymus) and RNA [poly(A).poly(U)] has been conducted. With the exception of [Pt(dipy)(2-Mepy)2]2+, all of the complexes interact strongly, by intercalation, with both nucleic acids giving rise to large changes in the electronic spectra and induced circular dichroism signals; in addition, viscosity experiments on rodlike DNA and RNA show that both biopolymers elongate upon interaction with the complexes. The binding constant values, KB, determined at 25 degrees C, indicate that, at 0.101 M ionic strength, the affinity for poly(A).poly(U) is strongly dependent on the complexes nature, while for DNA it is leveled off. [Pt(dipy)(2-Mepy)2]2+ binds to DNA but does not interact appreciably with poly(A).poly(U).     

New findings for in-gel digestion accelerated by high-intensity focused ultrasound for protein identification by matrix-assisted laser desorption ionization time-of-flight mass spectrometry

New findings in sample treatment based on high-intensity focused ultrasound (HIFU) for protein digestion after polyacrylamide gel electrophoresis separation are presented. The following variables were studied: (i) sample volume; (ii) sonotrode diameter; (iii) previous protein denaturation; (iv) cooling; (v) enzyme concentration; and (vi) protein concentration. Results showed that positive protein identification could be done after protein separation by gel electrophoresis through peptide mass fingerprint (PMF) in a volume as low as 25 microL. The time needed was less than 2 min and no cooling was necessary. The importance of the sonotrode diameter was negligible. On the other hand, protein denaturation before sonication was a trade-off for the success of procedure here described. The protein coverage was raised from 5 to 30%, and the number of peptides matching the proteins was also increased in a percentage ranging 10-100% when the classical overnight treatment is compared with the proposed HIFU procedure. The minimum amount of protein that can be identified using the HIFU sample treatment by matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF-MS) was 0.06 microg. The lower concentration of trypsin successfully used to obtain an adequate protein digestion was 3.6 microg/mL.     

Interactions between gemini surfactants and polymers: thermodynamic studies

Aqueous mixtures containing a homopolymer, poly(vinylpyrrolidone) (PVP), or a hydrophobically modified graft copolymer, HM-pullulan, (PULAU9, where 9 stands for the nominal substitution degree), and different Gemini surfactants have been investigated at 25.0 degrees C. A wide variety of experimental conditions were addressed by changing the amount of polymer and of surfactant. The Gemini surfactants were synthesized, purified, and characterized by routine methods. They differ from each other in polar head groups (two sulfonate-, two quaternary ammonium-, or two arginine-based groups), in alkyl chain length (11 or 12 carbon atoms), and in the distance between the polar head groups. The spacers consist of 2, 3, and 6 methylene units or 3 oxyethylene units. Surface activity and solution calorimetry measurements yield some physicochemical features inherent to micelle formation and polymer-surfactant interactions. The data are supported by ionic conductivity, detecting the critical thresholds and quantifying the modifications in binding associated with critical association (CAC) and micelle formation (CMC*). The Gibbs energy of transfer from the micelles to a polymer-binding site, DeltaGtrans, was evaluated from the CAC/CMC* ratios versus the amount of added polymer. A similar procedure determined the enthalpy of transfer, DeltaHtrans. DeltaGtrans decreases with added polymer, whereas DeltaHtrans becomes more negative on increasing the amount of polymer in the medium. According to the selected data presented here, cationic Geminis do not interact with PVP, while significant interactions have been observed in other surfactants. In mixtures with PULAU9, the interaction is significant for all Geminis. This effect is due to interactions between the surfactants and the hydrophobic alkyl groups on the main polymer chain. The pendent groups facing away from the polysaccharide chain act as binding sites for aggregates onto such polymers.     

Imaging photoelectron transmission through self-assembled monolayers: the work-function of alkanethiols coated gold

In this paper, we present a new approach for studying the electronic properties of self-assembled monolayers and their interaction with a conductive substrate, the low-energy photoelectron imaging spectroscopy (LEPIS). LEPIS relies on imaging of photoelectrons ejected from a conductive substrate and subsequently transmitted through organic monolayers. Using this method, we measure the relative work-function of alkanethiols of different length on gold substrate, and we are able to follow the changes occurring when the surface coverage is varied. We also computed the work-function of model alkanethiols using a plane-wave density functional theory approach, in order to demonstrate the correlation between changes in the work-function with the monolayer organization and density.     

Coupling selectivity in the radical‐controlled oxidative polymerization of 4‐phenoxyphenol catalyzed by (1,4,7‐triisopropyl‐1,4,7‐triazacyclononane)copper(II) complex

Various effects on the coupling selectivity of the oxidative polymerization of 4‐phenoxyphenol catalyzed by (1,4,7‐triisopropyl‐1,4,7‐triazacyclononane)copper(II) halogeno complex [Cu(tacn)X₂] are described. With respect to the amount of the catalyst and the nature of the halide ion (X) of Cu(tacn)X₂, the coupling selectivity hardly changed. The Cu(tacn) catalyst possessed a turnover number greater than 1860. As the temperature of the reaction and the polarity of the reaction solvent were elevated, the C O coupling at the o‐position increased, but the C C coupling was not involved. For the polymerization in toluene at 80 °C, poly(1,4‐phenylene oxide), obtained as a methanol‐insoluble part, showed the highest number‐average molecular weight of 4000 with a melting point (T_m) of 195 °C. Only a slight change in the coupling selectivity was observed in the presence or absence of hindered amines as the base. Surprisingly, however, the C O selectivity decreased from 100 to 24% with less hindered amines, indicating that the selectivity drastically changed from a preference for C O coupling to a preference for C C coupling. © 2000 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 38: 4792–4804, 2000     

Numerical stability analysis of submerged slopes subject to rapid sedimentation processes

In this paper, the stability of infinitely long submerged slopes subject to rapid sedimentation processes is theoretically/numerically investigated. In particular, rapid deposition is considered as a potential triggering factor for static liquefaction in inclined loose sand layers. The corresponding initial boundary value problem is numerically analysed by employing a one-dimensional finite difference scheme in conjunction with two distinct versions of the same constitutive model—elasto-plastic and elasto-viscoplastic (EV). The EV approach is shown to be the most suitable for describing the onset of liquefaction phenomena, since its mathematical well-posedness and numerical stability are never lost. The results of parametric analyses for both homogeneous and inhomogeneous strata are critically discussed in the light of some case history data concerning natural and anthropic sedimentation processes.     

A quasi-monochromatic X-rays source for art painting pigments investigation

Monochromatic X-ray sources can be used for several applications, like in medicine or in studying our cultural heritage. We are investigating imaging systems based on a tuneable energy band X-ray source, to obtain an element mapping of painting layers using the K-edge technique. The narrow energy band beams are obtained with conventional X-ray source via Bragg diffraction on a mosaic crystal; such an analysis has been performed at different diffraction angles, tuning the energy to investigate spectra of interest from the artistic point of view, like zinc and copper. In this paper the characteristics of the system in terms of fluence rate are reported, and first results of this technique on canvas samples and painting are presented.     

Synthesis of hexahydrocarbazoles by cyclisation of 3-(but-3-enyl) indole derivatives

A new cyclisation of 3-(but-3-enyl) indole derivatives that produces policyclic compounds with a hexahydrocarbazole structure is described. In this reaction three stereogenic centres are generated in one step, and this process can be considered as evidence of the biogenetic relationship between anominine and tubingensin A.     

A sinapic acid–calix[4]arene hybrid selectively binds Pb over Hg and Cd

The binding affinity for Pb²⁺, Cd²⁺ and Hg²⁺ of the sinapic acid–calix[4]arene hybrid 2, having four sinapyl pendants at the upper rim, has been investigated via an UV–Vis study. Compound 2 has better complexing ability than the monomeric p-phenetidine derivative 1. This highlights that the clustering of sinapyl units in a basket-like structure, dictated by the calixarene scaffold, greatly enhances the complexing properties. Ligand 2 forms complexes even with Hg²⁺, which is not complexed by 1 at all; the complexes formed by 2 with Pb²⁺ and Cd²⁺ are much stronger than the analogous complexes formed by 1. The UV–Vis investigation shows that the hybrid 2 markedly favors Pb²⁺ over Cd²⁺ and Hg²⁺. Information on the structural properties of the complex species was obtained by ¹H NMR spectroscopy. NMR data show that all three metal ions are placed into the cavity consisting of the calixarene scaffold and the sinapyl pendants, though their binding affects the coordinating regions to a different extent.