DNA three-way junction with a dinuclear iron(II) supramolecular helicate at the center: a NMR structural study

A tetracationic supramolecular helicate, [Fe2L3]4+ (L = C25H20N4), with a triple-helical architecture is found to induce the formation of a three-way junction (3WJ) of deoxyribonucleotides with the helicate located in the center of the junction. NMR spectroscopic studies of the interaction between the M enantiomer of the helicate and two different oligonucleotides, [5'-d(TATGGTACCATA)]2 and [5'-d(CGTACG)]2, show that, in each case, the 2-fold symmetry of the helicate is lifted, while the 3-fold symmetry around the helicate axis is retained. The 1:3 helicate/DNA stoichiometry estimated from 1D NMR spectra supports a molecular model of a three-way junction composed of three strands. Three separate double-helical arms of the three-way junction are chemically identical giving rise to one set of proton resonances. The NOE contacts between the helicate and DNA unambiguously show that the helicate is fitted into the center of the three-way junction experiencing a hydrophobic 3-fold symmetric environment. Close stacking interactions between the ligand phenyl groups and the nucleotide bases are demonstrated through unusually large downfield shifts (1-2 ppm) of the phenyl protons. The unprecedented 3WJ arrangement observed in solution has also been found to exist in the crystal structure of the helicate adduct of [d(CGTACG)2] (Angew. Chem., Int. Ed. 2006, 45, 1227).     

Nuclear electric quadrupole moment of gold

The nuclear quadrupole moment for (197)Au has been determined on the base of the state-of-art relativistic molecular calculations. The experimental shifts in the nuclear coupling constants in the series of molecules AuF, XeAuF, KrAuF, ArAuF, (OC)AuF, and AuH have been combined with highly accurate determinations of the electric field gradient (EFG) at the gold nucleus, obtained by molecular relativistic Dirac-Coulomb-Gaunt Hartree-Fock calculations. The electronic correlation contribution to the EFG is included with the CCSD(T) and CCSD-T approaches, also in the four-component framework, using a finite-difference method. In order to estimate the accuracy of their approach the authors have thoroughly investigated the convergence of the results with respect to the basis set employed and the size of the correlated orbital space. The effect of the full Breit electron-electron interaction on the nuclear quadrupole moment of gold has also been considered explicitly for the AuF molecule. They obtain for (197)Au a nuclear quadrupole moment of 510+/-15 mb, which deviates by about 7% from the currently accepted muonic value.     

Nanoscale conformational ordering in polyanilines investigated by SAXS and AFM

Understanding the adsorption mechanisms in nanostructured polymer films has become crucial for their use in technological applications, since film properties vary considerably with the experimental conditions utilized for film fabrication. In this paper, we employ small-angle X-ray scattering (SAXS) to investigate solutions of polyanilines and correlate the chain conformations with morphological features of the nanostructured films obtained with atomic force microscopy (AFM). It is shown that aggregates formed already in solution affect the film morphology; in particular, at early stages of adsorption film morphology appears entirely governed by the chain conformation in solution and adsorption of aggregates. We also use SAXS data for modeling poly(o-ethoxyaniline) (POEA) particle shape through an ab initio procedure based on simulated annealing using the dummy atom model (DAM), which is then compared to the morphological features of POEA films fabricated with distinct pHs and doping acids. Interestingly, when the derivative POEA is doped with p-toluene sulfonic acid (TSA), the resulting films exhibit a fibrillar morphology-seen with atomic force microscopy and transmission electron microscopy-that is consistent with the cylindrical shape inferred from the SAXS data. This is in contrast with the globular morphology observed for POEA films doped with other acids.     

Non-ionic contributions to the electric-field gradient at 111Cd/181Ta impurities in bixbyites

The electric-field-gradient (EFG) tensor at both cation sites of the bixbyite structure in ¹⁸¹Hf-implanted Lu- and Sm-sesquioxides was determined by the PAC technique. The cumulated EFG data at Ta-impurity sites in binary oxides enable us to discuss the “universal” character of the empirical correlation between local and ionic contributions to the EFG in these systems. An EFG factorization in terms of the electronic characteristics of the probe and the geometry of the cation coordination is proposed, which explains the experimental EFG results at Ta/Cd impurity sites in bixbyites and agrees with a simplified decomposition of the EFG valence contribution coming from ab-initio calculations. This revised version was published online in August 2006 with corrections to the Cover Date.     

Kinetics and mechanism of the aminolysis of O‐phenyl 4‐nitrophenyl dithiocarbonate in aqueous ethanol

The reactions of the title substrate (1) with a series of secondary alicyclic amines are subjected to a kinetic investigation in 44 wt% ethanol‐water, at 25.0°C, ionic strength 0.2 M (KCl). Under amine excess over the substrate, pseudo‐first‐order rate coefficients (k_obs) are obtained. Plots of k_obs against [NH], where NH is the free amine, are nonlinear upwards, except the reactions of piperidine, which show linear plots. According to the kinetic results and the analysis of products, a reaction scheme is proposed with two tetrahedral intermediates, one zwitterionic (T^±) and another anionic (T⁻), with a kinetically significant proton transfer from T^± to an amine to yield T⁻ (k₃ step). By nonlinear least‐squares fitting of an equation derived from the scheme to the experimental points, the rate microcoefficients involved in the reactions are determined. Comparison of the kinetics of the title reactions with the linear k_obs vs. [NH] plots found in the same aminolysis of O‐ethyl 4‐nitrophenyl dithiocarbonate (2) in the same solvent shows that the rate coefficient for leaving group expulsion from T^± (k₂) is larger for 2 due to a stronger push by EtO than PhO. The k₃ value is the same for both reactions since both proton transfers are diffusion controlled. Comparison of the title reactions with the same aminolysis of phenyl 4‐nitrophenyl thionocarbonate (3) in water indicates that (i) the k₂ value is larger for the aminolysis of 1 due to the less basic nucleofuge involved and the small solvent effect on k₂, (ii) the k₃ value is smaller for the reactions of 1 due to the more viscous solvent, (iii) the rate coefficient for amine expulsion from T^± (k₋₁) is larger for the aminolysis of 1 than that of 3 due to a solvent effect, and (iv) the value of the rate coefficient for amine attack (k₁) is smaller for the aminolysis of 1 in aqueous ethanol, which can be explained by a predominant solvent effect relative to the electron‐withdrawing effect from the nucleofuge. © 1999 John Wiley & Sons, Inc. Int J Chem Kinet 31: 839–845, 1999     

Effect of the alkylaluminum cocatalyst on ethylene polymerization by a nickel–diimine complex

Different chlorine-free alkylaluminum compounds were active cocatalysts for ethylene polymerization in the presence of 1,4-bis(2,6-diisopropylphenyl)-acenaphthenediimine-dichloronickel (II) (1). The combination of 1 with trimethylaluminum or triisobutylaluminum produced catalytically active species that polymerized ethylene with productivities up to 469 kg_polymer/(mol_Ni · h). The activity of the catalytic system and the properties of the polymeric materials were influenced strongly by the reaction temperature. The polymers had a high molecular weight (up to 642 × 10³ g · mol⁻¹), and the molecular weight increased with the reaction time. The polyethylenes were branched, and the branching could be modulated by the proper choice of reaction parameters. © 1999 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 37: 4656–4663, 1999     

Exact recession velocity and cosmic redshift based on cosmological principle and Yang-Mills gravity

Based on the cosmological principle and quantum Yang-Mills gravity in the super-macroscopic limit, we obtain an exact recession velocity and cosmic redshift z, as measured in an inertial frame F ≡ F(t, x, y, z). For a matter-dominated universe, we have the effective cosmic metric tensor G_(μν)(t) =(B~2(t),-A~2(t),-A~2(t),-A~2(t)),A ∝ B ∝ t~(1/2), where t has the operational meaning of time in F frame. We assume a cosmic action S ≡ S cos involving Gμν(t) and derive the ‘Okubo equation' of motion, G μν(t)?μS ?νS-m2= 0, for a distant galaxy with mass m. This cos-√mic equation predicts an exact recession velocity, ■, where H = A˙(t)/A(t) and Co = B/A, as observed in the inertial frame F. For small velocities, we have the usual Hubble's law r≈ rH for recession velocities. Following the formulation of the accelerated Wu-Doppler effect, we investigate cosmic redshifts z as measured in F. It is natural to assume the massless Okubo equation, G μν(t)?μψe?νψe= 0, for light emitted from accelerated distant galaxies. Based on the principle of limiting continuation of physical laws, we obtain a transformation for covariant wave 4-vectors between and inertial and an accelerated frame, and predict a relationship for the exact recession velocity and cosmic redshift, z = [(1 + V_r)/(1-V_r~2)~(1/2)]-1, where Vr= r˙/Co 1, as observed in the inertial frame F. These predictions of the cosmic model are consistent with experiments for small velocities and should be further tested.     

Ab initio study of Fe-doped SnO: Local structure and hyperfine interactions at the Fe nucleus

In this work we perform an ab initio study of the electric field gradient (EFG) at the nucleus of Fe impurities in crystalline SnO. The Augmented Plane Waves plus Local Orbitals method is used to obtain the electronic structure of the doped system and the atomic relaxations introduced by the impurities in the SnO host in a fully self-consistent way. Most calculations are performed assuming that Fe ions replace the Sn atoms of the structure, in some cases including oxygen vacancies in order to discuss their role in the hyperfine interactions and in determining the local structure around Fe impurities. The case of interstitial Fe sites is also considered. Our predictions are compared with available Müssbauer spectroscopy results and also with theoretical and experimental results obtained for rutile SnO₂ and TiO₂.     

A multidimensional high performance liquid chromatography method coupled with amperometric detection using a boron-doped diamond electrode for the simultaneous determination of sulfamethoxazole and trimethoprim in bovine milk

The development and validation of a multidimensional HPLC method using an on-line clean-up column coupled with amperometric detection employing a boron-doped diamond (BDD) electrode for the simultaneous determination of sulfamethoxazole (SMX) and trimethoprim (TMP) in bovine milk are presented. Aliquots of pre-prepared skim-milk samples were directly injected into a RAM octyl-BSA column in order to remove proteins that otherwise would interfere with milk analysis. After exclusion of the milk proteins, SMX and TMP were transferred to the analytical column (an octyl column) and the separation of the compounds from one another and from other endogenous milk components was achieved. SMX and TMP were detected amperometrically at 1.25 V vs. Ag/AgCl (3.0 mol L⁻¹ KCl). Results with good linearity in the concentration ranges 50-800 and 25-400 μg L⁻¹ for SMX and TMP, respectively, were obtained and no fouling of the BDD electrode was observed within the experimental period of several hours. The intra- and inter-assay coefficients of variation were less than 10% for both drugs and the obtained LOD values for SMX and TMP were 25.0 and 15.0 μg L⁻¹, respectively.