Functionalization Conditions of PLGA-PEG-PLGA Copolymer with Itaconic Anhydride

Summary: Biodegradable thermosensitive triblock copolymers based on poly(ethylene glycol) and poly(lactic-co-glycolic acid) (PLGA-PEG-PLGA) prepared via ring opening polymerization were modified by itaconic anhydride (ITA), which gives copolymer both reactive double bonds and functional carboxylic acid groups essential for the reaction with biological active material. Functionalization conditions comprising ITA purification, temperature, time and presence of solvent were optimized with the respect to amount of end-capped ITA. Maximum of 76.6 mol. % of bonded ITA were reached via “one pot” reaction in a bulk at 110 °C after 1.5 h. ITA functionalization thermally stabilized the original copolymer by increasing the initial degradation temperature T_d from 284 °C to 294 °C and changing the negative glass transition temperature (T_g = -1.8 °C) to positive one up to 2.4 °C. The novel functionalized macromonomer can be cross-linked either chemically or physically in order to produce new functionalized hydrogel network applicable as biomedical material in tissue engineering.     

Covalent bonding of azoles to quaternary protoberberine alkaloids

Adducts of the quaternary protoberberine alkaloids (QPA) berberine, palmatine, and coptisine were prepared with nucleophiles derived from pyrrole, pyrazole, imidazole, and 1,2,4-triazole. The products, 8-substituted 7,8-dihydroprotoberberines, were identified by mass spectrometry and 1D and 2D NMR spectroscopy, including (1)H--(15)N shift correlations at natural abundance. In addition, two adducts of QPA with chloroform and methanethiolate were characterized by using NMR data. Single-crystal X-ray structures of 8-pyrrolyl-7,8-dihydroberberine, 8-pyrazolyl-7,8-dihydroberberine, and 8-imidazolyl-7,8-dihydroberberine are also presented.     

Bioaffinity magnetic reactor for peptide digestion followed by analysis using bottom-up shotgun proteomics strategy

We report an efficient and streamlined way to improve the analysis and identification of peptides and proteins in complex mixtures of soluble proteins, cell lysates, etc. By using the shotgun proteomics methodology combined with bioaffinity purification we can remove or minimize the interference contamination of a complex tryptic digest and so avoid the time-consuming separation steps before the final MS analysis. We have proved that by means of enzymatic fragmentation (endoproteinases with Arg-C or/and Lys-C specificity) connected with the isolation of specific peptides we can obtain a simplified peptide mixture for easier identification of the entire protein. A new bioaffinity sorbent was developed for this purpose. Anhydrotrypsin (AHT), an inactive form of trypsin with an affinity for peptides with arginine (Arg) or lysine (Lys) at the C-terminus, was immobilized onto micro/nanoparticles with superparamagnetic properties (silica magnetite particles (SiMAG)-Carboxyl, Chemicell, Germany). This AHT carrier with a determined binding capacity (26.8 nmol/mg of carrier) was tested with a model peptide, human neurotensin, and the resulting MS spectra confirmed the validity of this approach.     

Bis[2‐(2‐hydroxyethyl)pyridinium] μ‐decavanadato‐bis[pentaaquamanganate(II)] tetrahydrate

The structure of the title compound, (C₇H₁₀NO)₂[Mn₂V₁₀O₂₈(H₂O)₁₀]·4H₂O or (C₅H₄NHCH₂CH₂OH)₂[{Mn(H₂O)₅}₂V₁₀O₂₈]·4H₂O, at 293 (2) K has triclinic (P) symmetry. The asymmetric unit consists of one half of a decavanadate anion of C_i symmetry, one [Mn(H₂O)₅]²⁺ group, one 2‐(2‐hydroxyethyl)pyridinium cation and two solvent water molecules. The decavanadate ion bridges between two [Mn(H₂O)₅]²⁺ groups, thus forming a dodecanuclear complex unit. Complex units are connected via a hydrogen‐bonding network, forming supramolecular layers lying in the (001) plane. Cations and solvent water molecules are located between these layers.     

Phase transition in swollen gels 31. Swelling and mechanical behaviour of interpenetrating networks composed of poly(1-vinyl-2-pyrrolidone) and polyacrylamide in water/acetone mixtures

Swelling and mechanical behaviour of interpenetrating positively charged polymer networks (IPNs), composed of poly(1-vinyl-2-pyrrolidone) (PVP) networks and polyacrylamide (PAAm) networks, was investigated in water/acetone mixtures. The first PVP networks were prepared by radiation polymerization at room temperature; after that the PVP networks were swollen in PAAm aqueous solutions and the networks were prepared by thermal copolymerization at 65 °C. The IPNs were prepared with various amounts of the two charged comonomers (quaternary ammonium salts) in the presence of crosslinkers. Two transition regions, detected in the dependence of swelling ratio X on acetone concentration a, suggest that a two-phase structure was formed. The first transition, located between 44 and 60 vol% of acetone, corresponds to PAAm networks, while the second transition, located at 75 vol% of acetone, corresponds to PVP networks. Depending on the amount of positive charges bound to chains, both transitions exhibit continuous or discontinuous character; this fact indicates that intermolecular interactions between the two components occur with the formation of IPNs (e.g., more polar, charged PVP component increases the extent of hydrogen bonding and makes acetone less effective solvent for IPNs at the PAAm transition). The dependences of log G on log X are roughly the same regardless of charge concentrations; this means that the mechanical behaviour is predominantly determined by the degree of swelling for all gels.     

Characterization of metabolites of sibutramine in primary cultures of rat hepatocytes by liquid chromatography–ion trap mass spectrometry

Liquid chromatography–ion trap mass spectrometry was used for the detection and structural characterization of metabolites of the anti-obesity drug sibutramine. Metabolites were profiled from incubations of sibutramine in primary cultures of rat hepatocytes. In addition, enantioselectivity of sibutramine metabolism was investigated by carrying out separate incubations with (R)- and (S)-sibutramine. As a result, biotransformation profile for sibutramine with rat hepatocytes is proposed. Nineteen metabolites and several of their isomers formed via demethylation, hydroxylation, dehydrogenation, acetylation, attachment of CO₂, and glucuronidation were identified in MS² and MS³ experiments, though the exact position of the functionality, mostly hydroxylation, could not always be determined from the mass spectrometric information. However, clear enantioselective formation was observed for two hydroxyl derivatives and two glucuronide conjugates, indicating that the hydroxyl/glucuronic acid moiety in those structures is close to the chiral center. Most of the metabolites found in this study are new metabolites of sibutramine, which were not previously reported.     

Study of Microwave Torch Plasmachemical Synthesis of Iron Oxide Nanoparticles Focused on the Analysis of Phase Composition

This work presents the results obtained on the single-step route towards the synthesis of iron oxide nanoparticles in a microwave plasma torch. The torch is supplied by 660 sccm of Ar mixed with 1 sccm of Fe(CO)₅ and a variable amount of O₂. The influence of oxygen addition on the phase composition of the synthesized powder was studied. Magnetite and maghemite phases could not be distinguished using the standard X-ray diffraction (XRD) analysis. Therefore, a combined XRD and Raman spectra analysis had to be applied, which is based on fitting of selected diffraction peaks and spectral features. According to XRD and Raman spectroscopy, the powder synthesized from Ar/Fe(CO)₅ consisted about 50 % of magnetite, Fe₃O₄, the rest being α-Fe and FeO. An increase in oxygen flow rate led to an increase in γ-Fe₂O₃ percentage, at the expense of α-Fe, FeO and Fe₃O₄. Almost pure γ-Fe₂O₃ was synthesized at oxygen flow rates 25–75× higher than the flow rate of Fe(CO)₅. A further increase in the oxygen flow rate led to α-Fe₂O₃ and ε-Fe₂O₃ production. The distributions of nanoparticles’ (NPs) diameters were obtained using transmission electron microscopy (TEM) and dynamic light scattering (DLS). The mean diameter of the NPs measured by TEM was 13 nm while the DLS measurements led to the mean diameter of 12 nm. About 90 % of all particles had the diameter in the range of 5–21 nm but a few larger particles were observed in TEM micrographs.     

DNA-based biosensors with external Nafion and chitosan membranes for the evaluation of the antioxidant activity of beer,coffee, and tea

Novel electrochemical DNA-based biosensors with outer-sphere Nafion and chitosan protective membranes were prepared for the evaluation of antioxidant properties of beverages (beer, coffee, and black tea) against prooxidant hydroxyl radicals. A carbon working electrode of a screen-printed three-electrode assembly was modified using a layer-by-layer deposition technique with low molecular weight double-stranded DNA and a Nafion or chitosan film. The membrane-covered DNA biosensors were initially tested with respect to their voltammetric and impedimetric response after the incubation of the beverage and the medium exchange for the solution of the redox indicator [Fe(CN)₆]^3?/4?. While the Nafion-protected biosensor proved to be suitable for beer and black tea extracts, the chitosan-protected biosensor was successfully used in a coffee extract. Afterwards, the applicability was successfully verified for these biosensors for the detection of a deep degradation of the surface-attached DNA at the incubation in the cleavage agent (hydroxyl radicals generated via Fenton reaction) and for the evaluation of antioxidant properties of coffee and black tea extracts against prooxidant hydroxyl radicals. The investigation of the novel biosensors with a protective membrane represents a significant contribution to the field of electrochemical DNA biosensors utilization.      

Toll-Like Receptor 22 in Labeo rohita: Molecular Cloning,Characterization, 3D Modeling,and Expression Analysis Following Ligands Stimulation and Bacterial Infection

Toll-like receptors (TLRs) are a class of innate immune receptors that sense pathogens or their molecular signatures and activate signaling cascades to induce a quick and non-specific immune response in the host. Among various types of TLRs, TLR22 is exclusively present in teleosts and amphibians and is expected to play the distinctive role in innate immunity. This report describes molecular cloning, three-dimensional (3D) modeling, and expression analysis of TLR22 in rohu (Labeo rohita), the most commercially important freshwater fish species in the Indian subcontinent. The open reading frame (ORF) of rohu TLR22 (LrTLR22) comprised of 2,838 nucleotides (nt), encoding 946 amino acid (aa) residues with the molecular mass of ～107.6 kDa. The secondary structure of deduced LrTLR22 exhibited the presence of signal peptide (1–22 aa), 18 leucine-rich repeat (LRR) regions (79–736 aa), and TIR domain (792–935 aa). The 3D model of LrTLR22-LRR regions together elucidated the horse-shoe-shaped structure having parallel β-strands at the concave surface and few α-helices at the convex surface. The TIR domain structure revealed alternate presence of five α-helices and β-sheets. Phylogenetically, LrTLR22 was closely related to common carp and exhibited significant similarity (92.2 %) and identity (86.1 %) in their amino acids. In rohu, TLR22 was constitutively expressed in all embryonic developmental stages, and tissue-specific analysis illustrated its expression in all examined tissues, highest was in liver and lowest in brain. In vivo modulation of TLR22 gene expression was analyzed by quantitative real-time PCR (qRT-PCR) assay following stimulation with lipopolysaccharide (LPS), synthetic double stranded RNA (polyinosinic-polycytidylic acid), and bacterial (Aeromonas hydrophila) RNA. Among these ligands, bacterial RNA most significantly (p?A. hydrophila infection, induction of TLR22 gene expression was also observed in majority of the tested tissues. Together, these data suggested that in addition to sensing other microbial signatures, TLR22 can recognize bacterial RNA and may play the important role in augmenting innate immunity in fish.