Characterization of protein adducts formed by toxic alkaloids by nano‐scale liquid chromatography with mass spectrometry

Betel quid chewing is associated with cytotoxicity, genotoxicity and carcinogenicity in diseases such as oral cancer, liver cirrhosis, hepatocellular carcinoma and diabetes mellitus. Arecoline and arecaidine, which are the main alkaloids in the areca nut, are potential exposure biomarkers in habitual betel quid users. This study developed a method of detecting arecoline‐ and arecaidine‐protein adducts by mass spectrometry (MS). First, bovine serum albumin was used to predict and confirm the binding sites of proteins modified by arecoline or arecaidine. Cells were then treated with arecoline to identify new protein adducts after cellular metabolic processing. Finally, human plasma was used to model long‐term exposure to arecoline and arecaidine. Following isolation proteins were tryspin digested. The peptides afforded were separated and analyzed by nano‐scale liquid chromatography with MS using an LTQ Orbitrap mass spectrometer. The experimental findings showed that cysteine is the predominant amino acid in protein adduct formation. The goal of this study was to establish a screening platform for identifying novel protein adducts that form covalent bonds with arecoline or arecaidine. Use of this strategy to survey new protein‐toxic adducts may help to identify novel biomarkers of betel nut exposure. Copyright © 2012 John Wiley & Sons, Ltd.     

Increasing the dynamic range for the analysis of boron in PGAA

Prompt gamma activation analysis (PGAA) is especially sensitive for elements with high neutron-capture cross sections, like boron, which can be detected down to a level of ng/g. However, if it is a major component, the high count rate from its signal will distort the spectra, making the evaluation difficult. A lead attenuator was introduced in front of the HPGe-detector to reduce low-energy gamma radiation and specifically the boron gamma rays reaching the detector, whose thickness was found to be optimal at 10 mm. Detection efficiencies with and without the lead attenuator were compared, and it was shown that the dynamic range of the PGAA technique was significantly increased. The method was verified with the analyses of stoichiometric compounds: TiB₂, NiB, PVC, Alborex, and Alborite.     

Use of Mass Spectrometry in the Characterization of Polymers Emphasizing Metal-Containing Condensation Polymers

Suitable structure characterization is assisted through the use of mass spectrometry. Polymer fragmentation can be achieved in many ways including application of heat and ionizing radiation. MALDI MS allows routine analysis of polymers allowing identification of several repeat units. Graphite as a matrix allows higher mass ions to be created with less interfering ion fragments formed in comparison to more utilized matrix materials.     

Peroxiredoxin-1 from the Human Hookworm Ancylostoma ceylanicum Forms a Stable Oxidized Decamer and Is Covalently Inhibited by Conoidin A

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Synthesis and properties of phosphinothricin derivatives

Abstract

The synthesis and properties of phosphinothricin derivatives which have different alkyl groups attached to phosphorus or bear a substituent on the nitrogen are described and their biological activities discussed.     

Entropy of isolated quantum systems after a quench

A diagonal entropy, which depends only on the diagonal elements of the system's density matrix in the energy representation, has been recently introduced as the proper definition of thermodynamic entropy in out-of-equilibrium quantum systems. We study this quantity after an interaction quench in lattice hard-core bosons and spinless fermions, and after a local chemical potential quench in a system of hard-core bosons in a superlattice potential. The former systems have a chaotic regime, where the diagonal entropy becomes equivalent to the equilibrium microcanonical entropy, coinciding with the onset of thermalization. The latter system is integrable. We show that its diagonal entropy is additive and different from the entropy of a generalized Gibbs ensemble, which has been introduced to account for the effects of conserved quantities at integrability.     

The Superacid HBr/AlBr3: Protonation of Benzene and Ordered Crystal Structure of [C6H7]+[Al2Br7]−

Crystalline and properly ordered protonated benzene as the [C₆H₇]⁺[Al₂Br₇]^??(C₆H₆) salt 1 are obtained by the combination of solid AlBr₃, benzene, and HBr gas. Compound 1 was characterized and verified by NMR, Raman and X‐Ray spectroscopy. This unexpected simple and straight forward access shows that HBr/AlBr₃ is an underestimated superacid that should be used more frequently.     

Programmed Self‐Assembly of a Quadruplex DNA Nanowire

The ability to produce, reproducibly and systematically, well‐defined quadruplex DNA nanowires through controlled rational design is poorly understood despite potential utility in structural nanotechnology. The programmed hierarchical self‐assembly of a long four‐stranded DNA nanowire through cohesive self‐assembly of GpC and CpG “sticky” ends is reported. The encoding of bases within the quadruplex stem allows for an uninterrupted π‐stacking system with rectilinear propagation for hundreds of nanometers in length. The wire is mechanically stable and features superior nuclease resistance to double‐stranded DNA. The study indicates the feasibility for programmed assembly of uninterrupted quadruplex DNA nanowires. This is fundamental to the systematic investigation of well‐defined DNA nanostructures for uses in optoelectronic and electronic devices as well as other structural nanotechnology applications.     

Comparison between experiment and computer modeling for simple MILOconfigurations

The MILO is a crossed-field HPM, high power microwave source which uses its self-generated magnetic field to cut off electron flow to the anode. A detailed comparison of experimental results and a computer simulation has been made for a number of simple axisymmetric MILO structures designed to operate at 1 GHz. The structures were built from demountable components which enabled the number of cavities and their dimensions to be rapidly altered. Measurements were made of the fluctuating magnetic fields at the end of each cavity. The amplitude and depth of RF modulation of the magnetic fields, although repeatable, changed drastically from one configuration to the next; these parameters were compared with predictions from VIPER, a 2-D electromagnetic PIC code. Good quantitative agreement was obtained between experiments and the simulation in most situations, although, late in the current pulse, after about 100 ns, the level of RF began to decay; a phenomenon which became more pronounced as the applied voltage was increased. The decay was attributed to plasma formation on the cavity vanes and subsequent electron emission; this explanation was verified by computer modeling electron emission and by using vanes make from polished stainless steel in place of aluminum vanes     

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