What Hinders Electron Transfer Dissociation (ETD) of DNA Cations?

Radical activation methods, such as electron transfer dissociation (ETD), produce structural information complementary to collision-induced dissociation. Herein, electron transfer dissociation of 3-fold protonated DNA hexamers was studied to gain insight into the fragmentation mechanism. The fragmentation patterns of a large set of DNA hexamers confirm cytosine as the primary target of electron transfer. The reported data reveal backbone cleavage by internal electron transfer from the nucleobase to the phosphate linker leading either to a?/w or d/z? ion pairs. This reaction pathway contrasts with previous findings on the dissociation processes after electron capture by DNA cations, suggesting multiple, parallel dissociation channels. However, all these channels merely result in partial fragmentation of the precursor ion because the charge-reduced DNA radical cations are quite stable. Two hypotheses are put forward to explain the low dissociation yield of DNA radical cations: it is either attributed to non-covalent interactions between complementary fragments or to the stabilization of the unpaired electron in stacked nucleobases. MS³ experiments suggest that the charge-reduced species is the intact oligonucleotide. Moreover, introducing abasic sites significantly increases the dissociation yield of DNA cations. Consequently, the stabilization of the unpaired electron by π–π-stacking provides an appropriate rationale for the high intensity of DNA radical cations after electron transfer.

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Expanding Lipidome Coverage Using LC-MS/MS Data-Dependent Acquisition with Automated Exclusion List Generation

Untargeted omics analyses aim to comprehensively characterize biomolecules within a biological system. Changes in the presence or quantity of these biomolecules can indicate important biological perturbations, such as those caused by disease. With current technological advancements, the entire genome can now be sequenced; however, in the burgeoning fields of lipidomics, only a subset of lipids can be identified. The recent emergence of high resolution tandem mass spectrometry (HR-MS/MS), in combination with ultra-high performance liquid chromatography, has resulted in an increased coverage of the lipidome. Nevertheless, identifications from MS/MS are generally limited by the number of precursors that can be selected for fragmentation during chromatographic elution. Therefore, we developed the software IE-Omics to automate iterative exclusion (IE), where selected precursors using data-dependent topN analyses are excluded in sequential injections. In each sequential injection, unique precursors are fragmented until HR-MS/MS spectra of all ions above a user-defined intensity threshold are acquired. IE-Omics was applied to lipidomic analyses in Red Cross plasma and substantia nigra tissue. Coverage of the lipidome was drastically improved using IE. When applying IE-Omics to Red Cross plasma and substantia nigra lipid extracts in positive ion mode, 69% and 40% more molecular identifications were obtained, respectively. In addition, applying IE-Omics to a lipidomics workflow increased the coverage of trace species, including odd-chained and short-chained diacylglycerides and oxidized lipid species. By increasing the coverage of the lipidome, applying IE to a lipidomics workflow increases the probability of finding biomarkers and provides additional information for determining etiology of disease.

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Assessment of Reproducibility of Laser Electrospray Mass Spectrometry using Electrospray Deposition of Analyte

A nonresonant, femtosecond (fs) laser is employed to desorb samples of Victoria blue deposited on stainless steel or indium tin oxide (ITO) slides using either electrospray deposition (ESD) or dried droplet deposition. The use of ESD resulted in uniform films of Victoria blue whereas the dried droplet method resulted in the formation of a ring pattern of the dye. Laser electrospray mass spectrometry (LEMS) measurements of the ESD-prepared films on either substrate were similar and revealed lower average relative standard deviations for measurements within-film (20.9%) and between-films (8.7%) in comparison to dried droplet (75.5% and 40.2%, respectively). The mass spectral response for ESD samples on both substrates was linear (R²?>?0.99), enabling quantitative measurements over the selected range of 7.0?×?10^?11 to 2.8?×?10^?9 mol, as opposed to the dried droplet samples where quantitation was not possible (R²?=?0.56). The limit of detection was measured to be 210 fmol.

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Synthesis,electrolyte properties and solar cell performance of hyperbranched poly(aryl-ether-urea)s

Hyperbranched poly(aryl-ether-urea)s with phenyl, N,N-dimethylamino ethyl and polyethylene oxide end-groups linked through urethane group – HBPEU-1, HBPEU-2 and HBPEU-3 respectively – were synthesized from an AB₂-type blocked isocyanate monomer and characterized by FT-IR, ¹H-NMR, SEC-MALLS, TGA and DSC techniques. The molecular weight of the polymers were found to be ranged from 4.9 × 10³ ? 1.96 × 10⁴ g/mol. The TGA results showed that the polymers decompose between 175°C – 220°C. In the DSC curves, HBPEU-1 and HBPEU-3 showed T_g at 160°C and 53°C respectively, whereas HBPEU-2 did not showed clear T_g. All the three polymers were converted into polymer electrolytes by doping with LiI/I₂. The doped polymers showed remarkably high ionic conductivity, up to 222 – 277 times compared to the un-doped polymers and the highest conductivity was observed with doped HBPEU-2. The TiO₂ based dye-sensitized solar cells (DSSCs) were fabricated using the doped polymer electrolytes and their performance was tested; HBPEU-2 showed good performance by yielding energy conversion efficiency (η) of 4.5%.     

Non-Pincer-Type Manganese Complexes as Efficient Catalysts for the Hydrogenation of Esters

Catalytic hydrogenation of carboxylic acid esters is essential for the green production of pharmaceuticals, fragrances, and fine chemicals. Herein, we report the efficient hydrogenation of esters with manganese catalysts based on simple bidentate aminophosphine ligands. Monoligated Mn PN complexes are particularly active for the conversion of esters into the corresponding alcohols at Mn concentrations as low as 0.2 mol % in the presence of sub-stoichiometric amounts of KO^tBu base.     

The importance of glyceraldehyde radiolysis in chemical evolution

Studies in chemical evolution are intended to demonstrate how compounds of biological importance are generated from substances that could have been found in abiotic conditions on the primitive Earth or in extraterrestrial environments. In this context, the aim of the present work was to examine the behavior of dl-glyceraldehyde in both aqueous solution and solid samples under gamma irradiation. We irradiated dl-glyceraldehyde at different doses and temperatures with a gamma source; even at low doses and temperature (77 K), free radicals were detected. Among the products formed were ethylene glycol and glycolaldehyde. Some sugar-like compounds were also detected.

     

Developments in liquid-crystalline dimers and oligomers

ABSTRACT

Liquid-crystalline dimers and bimesogens have attracted much attention due to their propensity to exhibit the spontaneously chiral twist-bend mesophase (N_TB), most often by dimers with methylene spacers. Despite their relative ease of synthesis, the number of ether-linked twist-bend materials significantly lags behind those of methylene-linked compounds. In this work, we have prepared and studied a range of ether-linked bimesogens homologous in structure to the FFO9OCB; as with methylene-linked systems, it appears that it is molecular topology and the gross molecular shape that are the primary drivers for the formation of this phase of matter. Dimers and bimesogens are well studied within the context of the twist-bend phase; however, present understanding of this mesophase in oligomeric systems lags far behind. We report our recent efforts to prepare further examples of oligomeric twist-bend nematogens, including further examples of our ‘n+1’ methodology, which may allow the synthesis of high-purity, monodisperse materials of any given length to be prepared. We have observed that there is a tendency for these materials to exhibit highly ordered soft-crystalline mesophases as opposed to the twist-bend phase.     

Investigation of Cold Atmospheric Plasma-Activated Water for the Dental Unit Waterline System Contamination and Safety Evaluation in Vitro

The disinfection of the inner surface of a medical device has long been a challenge for the central sterile supply departments. Dental unit waterline system (DUWLs) foster the attachment of microorganisms and development of biofilm, which lead to continuous contamination of the outlet water from dental units; this contamination may be responsible for a potential risk of infection due to the exposure of patients and medical staff. The present study investigated the disinfection effects of cold atmospheric plasma-activated water (CAPAW) on DUWLs using a model of 5-day-old Enterococcus faecalis biofilm. The results showed that the colony-forming unit was reduced from 10⁷ to 0 after 5 min of treatment. The physicochemical properties of CAPAW were evaluated, including the pH value, oxidation reduction potential, and NO radical. The results showed that the inactivation mechanisms were mainly triggered by the reactive oxygen/nitrogen species. Additionally, CAPAW had a metal corrosion rate same as that of deionized water. We conclude that CAPAW can be applied as an appropriate alternative disinfectant against biofilm contamination of DUWLs.     

A Study of the Influence of the Surrounding Gas on the Plasma Jet and Coating Quality During Plasma Spraying

Coating quality is affected by arc and plume instabilities during plasma spraying. In closed chamber plasma spraying, gradual drift is one of the intermediate instabilities, which is mainly due to the electrode erosion. This work focuses on the source of the gradual drift of the plasma jet and the influence on coating quality. The ambient state inside the chamber was controlled by a ventilation system and a vacuum system. The variation in the plasma jet was observed by a particle flux image device based on a CCD camera. The optical spectrum of the plasma plume was measured and analyzed through an optical spectrometer. The results indicated that the addition of hydrogen to plasma gas induced the change in the plasma jet length and width with changing rates depending on the chamber state and the ventilation power. With poor ventilation, the intensity of H_α emission was found to become gradually stronger while H_β and H_γ were found to become weaker. On closing the chamber and retaining enough ventilation power, it was observed that the ambient gas slowly turned red. Simultaneously, the coating weight and thickness were slightly decreased meanwhile the porosity ratio was obviously increased. The red ambient gas has been proved to be able to acidify the city water with pH value decreased from 7 to 1–3. Without hydrogen, the plasma jet was found to be stable without reddening and variation, but the plasma enthalpy was unfortunately low.