Broadband measurement of true transverse relaxation rates in systems with coupled protons: application to the study of conformational exchange

Accurate measurement of transverse relaxation rates in coupled spin systems is important in the study of molecular dynamics, but is severely complicated by the signal modulations caused by scalar couplings in spin echo experiments. The most widely used experiments for measuring transverse relaxation in coupled systems, CPMG and PROJECT, can suppress such modulations, but they also both suppress some relaxation contributions, and average relaxation rates between coupled spins. Here we introduce a new experiment which for the first time allows accurate broadband measurement of transverse relaxation rates of coupled protons, and hence the determination of exchange rate constants in slow exchange from relaxation measurements. The problems encountered with existing methods are illustrated, and the use of the new method is demonstrated for the classic case of hindered amide rotation and for the more challenging problem of exchange between helical enantiomers of a gold(i) complex.

Existing methods for measuring transverse relaxation give incorrect results in coupled spin systems. Measuring true relaxation rates extends their utility.     

Entanglement generation through the interplay of harmonic driving and interaction in coupled superconducting qubits

We study the manipulation of quantum entanglement by periodic external fields. As an entanglement measure we compute numerically the concurrence of two coupled superconducting qubits both driven by a dc + ac external control parameter. We show that when the driving term of the Hamiltonian commutes with the qubit–qubit interaction term, it is possible to create or destroy entanglement in a controlled way by tuning the system at or near multiphoton resonances. On the other hand, when the driving does not commute with the qubit–qubit interaction, the control and generation of entanglement induced by the driving field is more robust and extended in parameter space, beyond the multiphoton resonances.     

Quantitative Comparison of Tandem Mass Spectra Obtained on Various Instruments

The similarity between two tandem mass spectra, which were measured on different instruments, was compared quantitatively using the similarity index (SI), defined as the dot product of the square root of peak intensities in the respective spectra. This function was found to be useful for comparing energy-dependent tandem mass spectra obtained on various instruments. Spectral comparisons show the similarity index in a 2D “heat map”, indicating which collision energy combinations result in similar spectra, and how good this agreement is. The results and methodology can be used in the pharma industry to design experiments and equipment well suited for good reproducibility. We suggest that to get good long-term reproducibility, it is best to adjust the collision energy to yield a spectrum very similar to a reference spectrum. It is likely to yield better results than using the same tuning file, which, for example, does not take into account that contamination of the ion source due to extended use may influence instrument tuning. The methodology may be used to characterize energy dependence on various instrument types, to optimize instrumentation, and to study the influence or correlation between various experimental parameters.

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Making Mass Spectrometry See the Light: The Promises and Challenges of Cryogenic Infrared Ion Spectroscopy as a Bioanalytical Technique

The detailed chemical information contained in the vibrational spectrum of a cryogenically cooled analyte ion would, in principle, make infrared (IR) ion spectroscopy a gold standard technique for molecular identification in mass spectrometry. Despite this immense potential, there are considerable challenges in both instrumentation and methodology to overcome before the technique is analytically useful. Here, we discuss the promise of IR ion spectroscopy for small molecule analysis in the context of metabolite identification. Experimental strategies to address sensitivity constraints, poor overall duty cycle, and speed of the experiment are intimately tied to the development of a mass-selective cryogenic trap. Therefore, the most likely avenues for success, in the authors’ opinion, are presented here, alongside alternative approaches and some thoughts on data interpretation.

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Characterization and in vitro phase I microsomal metabolism of designer benzodiazepines — an update comprising adinazolam,cloniprazepam, fonazepam, 3‐hydroxyphenazepam,metizolam and nitrazolam

Designer benzodiazepines represent an emerging class of new psychoactive substances. While other classes of new psychoactive substances such as cannabinoid receptor agonists and designer stimulants are mainly consumed for hedonistic reasons, designer benzodiazepines may also be consumed as ‘self‐medication’ by persons suffering from anxiety or other psychiatric disorders or as stand‐by ‘antidote’ by users of stimulant and hallucinogenic drugs. In the present study, five benzodiazepines (adinazolam, cloniprazepam, fonazepam, 3‐hydroxyphenazepam and nitrazolam) and one thienodiazepine (metizolam) offered as ‘research chemicals’ on the Internet were characterized and their main in vitro phase I metabolites tentatively identified after incubation with pooled human liver microsomes. For all compounds, the structural formula declared by the vendor was confirmed by nuclear magnetic resonance spectroscopy, gas chromatography–mass spectrometry (MS), liquid chromatography MS/MS and liquid chromatography quadrupole time‐of‐flight MS analysis. The detected in vitro phase I metabolites of adinazolam were N‐desmethyladinazolam and N‐didesmethyladinazolam. Metizolam showed a similar metabolism to other thienodiazepines comprising monohydroxylations and dihydroxylation. Cloniprazepam was metabolized to numerous metabolites with the main metabolic steps being N‐dealkylation, hydroxylation and reduction of the nitro function. It has to be noted that clonazepam is a metabolite of cloniprazepam, which may lead to difficulties when interpreting analytical findings. Nitrazolam and fonazepam both underwent monohydroxylation and reduction of the nitro function. In the case of 3‐OH‐phenazepam, no in vitro phase I metabolites were detected. Formation of licensed benzodiazepines (clonazepam after uptake of cloniprazepam) and the sale of metabolites of prescribed benzodiazepines (fonazepam, identical to norflunitrazepam, and 3‐hydroxyphenazepam) present the risk of incorrect interpretation of analytical findings. Copyright © 2016 John Wiley & Sons, Ltd.     

Light‐Controlled Interconversion between a Self‐Assembled Triangle and a Rhombicuboctahedral Sphere

Stimuli‐responsive structural reorganizations play an important role in biological processes, often in combination with kinetic control scenarios. In supramolecular mimics of such systems, light has been established as the perfect external trigger. Here, we report on the light‐driven structural rearrangement of a small, self‐assembled Pd₃L₆ ring based on photochromic dithienylethene (DTE) ligands into a rhombicuboctahedral Pd₂₄L₄₈ sphere measuring about 6.4 nm across. When the wavelength is changed, this interconversion can be fully reversed, as confirmed by NMR and UV/Vis spectroscopy as well as mass spectrometry. The sphere was visualized by AFM, TEM, and GISAXS measurements. Due to dissimilarities in the photoswitch conformations, the interconversion rates between the two assemblies are drastically different in the two directions.     

Mechanical Properties and Flow Behavior of Polymers for Enhanced Oil Recovery

The mechanical properties and flow behavior in porous media of three different polymer systems including a hydrophobically modified acrylamide-based copolymer (HMSPAM), a partially hydrolyzed polyacrylamide (HPAM), and a polysaccharide (xanthan gum) were evaluated to establish their functional differentiation as mobility control agents in enhanced oil recovery (EOR). The rheological properties of the polymers were described by the power-law model to investigate their non-Newtonian behavior. The first normal stress difference (N₁) and Weissenberg number (W_e) were also used to compare their elastic properties. The experimental results showed that, at comparable shear viscosity, HMSPAM exhibited significant elasticity compared to HPAM and xanthan gum. Shear resistance tests indicated that all of the polymers experienced an extra stress when converging into a capillary tube due to the “entrance effect.” Xanthan gum was the most mechanically stable polymer. Moreover, HMSPAM showed the superior reformability which was quantified by the regained viscosity with relaxation time. This could be explained by the rapid re-association of the hydrophobic interactions. Sandpack flood tests indicated that HMSPAM rendered extremely high mobility control ability during polymer flooding suggesting its potential in EOR. However, this polymer also experienced significant retention within the porous media (potential injectivity and plugging problems), which may be attributed to the formation of bulky associative polymer networks. In this work, UV spectrometry was employed to monitor the concentration of the produced polymer solutions and quantify the polymer retention within porous media. This analytical approach offers great reliability and simplicity. It was concluded that the use of a particular polymer system depends on the oil reservoir conditions and the target EOR application.     

In situ study of stones adorning a silver Torah shield using portable Raman spectrometers

A silver Torah shield fitted with a set of precious stones and glass imitations crafted in Poland in the first half of the 19th century was investigated using two of the currently distributed portable and relatively low‐cost Raman spectrometers in situ at the Jewish Museum in Prague. Observed Raman peaks corresponded well (+/− 3 cm⁻¹) to the reference values. The hand‐held instruments operated at 785‐ and 532‐nm laser excitations showed good performance in the fast and unambiguous identification of nearly 60 stones which were fitted on the shield: one blue aquamarine, three purple amethysts, thirteen red garnets (all classified as high‐percentage almandines), three white pearls, fifteen pieces of red coral and five chalcedonies (one white and four red). All of the other stones were identified as colored glass. The rather chaotic mixture of stones of various colors, cuts and sizes and the total volume of imitation glass support the theory that the mounted stones were gathered from Jewish households and donated for the adornment of the shield. The common portable Raman instruments represent an ideal tool for the quick and accurate identification of gemstones mounted in historical artifacts in situ in the framework of museum or collection sites in a non‐destructive way. Copyright © 2014 John Wiley & Sons, Ltd.     

Self-Assembling of cytosine nucleoside into triply-bound dimers in acid Media. A comprehensive evaluation of proton-bound pyrimidine nucleosides by electrospray tandem mass spectrometry,X-rays diffractometry,and theoretical calculations

Electrospray tandem mass spectrometry (ESI-MS/MS) is used to evaluate the assembling of cytosine and thymine nucleosides in the gas phase, through the formation of hydrogen bonded supermolecules. Mixtures of cytidine analogues and homologues deliver in the gas phase proton-bound heterodimers stabilized by multiple interactions, as proven by the kinetics of their dissociation into the corresponding protonated monomers. Theoretical calculations, performed on initial structures of methylcytosine homodimers available in the literature, converged to a minimized structure whereby the two pyrimidine rings interact through the formation of three hydrogen bonds of similar energy. The crystallographic data here reported show the equivalency of the two interacting pyrimidines which is attributable to the presence of an inversion center. Thymine and uracil pyrimidyl nucleosides form, by ESI, gaseous proton-bound dimers. The kinetic of their dissociation into the related protonated monomers shows that the nucleobases are weekly interacting through a single hydrogen bond. The minimized structure of the protonated heterodimer formed by thymine and N-1-methylthymine confirmed the existence of mainly one hydrogen bond which links the two nucleobases through the O4 oxygens. No crystallographic data exists on thymine proton-bound species, nor have we been able to obtain these aggregates in the solid phase. The gaseous phase, under high vacuum conditions, seems therefore a suitable environment where vanishing structures produced by ESI can be studied with a good degree of approximation.     

Polystyrene-supported (2S)-(-)-3-exo-piperazinoisoborneol: an efficient catalyst for the batch and continuous flow production of enantiopure alcohols

A polystyrene-supported analog (PS-PIB) of 3-exo-morpholinoisoborneol (MIB), designed for increased chemical stability, has been synthesized and used as a ligand in the asymmetric alkylation of aldehydes with Et(2)Zn. The supported ligand turned out to be highly active and enantioselective for a broad scope of substrates (92-99% ee), allowing repeated recycling. A single-pass, continuous flow process implemented with PS-PIB shows only a marginal decrease in conversion after 30 h of operation.