Influence of structure on binding of chlorophylls to peptide ligands

Four classes of chlorophyll (Chl), a, b, c, and d, are involved in photosynthesis within cyanobacteria, algae, and plants. These classes have different evolutionary origins, chemical properties, and biological functions. Our results demonstrate that peptide-bound ligands provided by the imidazole group of histidine and the charge-compensated glutamate-arginine ion pair readily form coordination bonds with Chls a and d but do not interact significantly with Chls b and c. These ligands are apparently not sufficiently strong Lewis bases to displace strongly coordinated water from Chls b and c. These differences determine specificity of binding of Chls in light-harvesting complexes and play an important role in assembly of stable Chl-protein complexes, which has had a profound impact on the evolution of photosynthetic organisms.     

1,3-dipolar cycloaddition reactions of azomethine ylides on enantiomerically pure (E)-γ-alkoxy-α,β-unsaturated esters.

Enantiomerically pure (E)-γ-alkoxy-α,β-unsaturated esters were reacted with azomethine ylides obtained from glycine imines in the presence of LiBr and diazabicycloundecene (DBU), to afford tetrasubstituted pyrrolidines with complete regiocontrol and fair to excellent diastereoselectivity (only two diastereoisomers formed in up to 96: 4 diastereoisomeric ratio). The results are compared with those of other 1,3-dipolar cycloadditions, and the origin of stereocontrol is discussed.     

Self-assembled monolayers and electrostatically self-assembled multilayers of polyalkylviologens on sulfonate-modified gold and indium–tin–oxide electrodes

Self-assembly (SA) of polyviologens with linear alkyl spacers PVn (n = 3–10) on sulfonate-primed gold and ITO electrode surfaces has been investigated by CV, QCM, XPS and AFM. The polymers form stable and relatively dense monolayers even from 10⁻⁴ M PVn concentration. The viologen surface density is decreased as n is increased but for n = 10 and on alkylsulfonate-primed surfaces a strong adsorption takes place, with decreased redox potential and very narrow cyclic voltammogram of the absorbed layer due to organized structures on the surface.Stable and regular electrostatically self-assembled (ESA) multilayers are built on sulfonate-primed surfaces with PV3 and polysulfonates. From XPS analysis, the composition of the PVn/polysulfonate multilayers corresponds to a 1:1 ratio of polyanion and polycation charges, i.e., no extra non-polymeric ion is present, independently from the alkane chain length. The rate of electron transfer within the multilayers (diffusion coefficient = ca. 10⁻⁹ cm² s⁻¹) is higher than for analogous bulk materials.     

Determination of Arsenic in Food Samples by Hydride Generation – Atomic Absorption Spectrometry

A method for the determination of trace amounts of arsenic in food samples using flow injection analysis and atomic absorption spectrometry with hydride generation (FI-HG AAS) was developed. The parameters of the flow injection system and the hydride generation were optimized with respect to reagent concentrations, atomization temperature, injection volume, reaction coil length and carrier flow rate. The limits of detection and quantification were 0.34µgL^–1 and 1.2µgL^–:1, respectively, and the analytical curve is linear up to 30.0µgL^–1 arsenic. The relative standard deviation for 12 replicates varies between 5% for 4.0µgL^–1 As and 1.8% for 30.0µgL^–1 As, with an injection frequency of up to 135h^–1. Interferences from Ni(II), Cu(II), Fe(III), Cr(III), Mo(II), Bi(III), Se(IV), Se(VI), Sb(III) and Sb(V) could be masked with a mixture of ascorbic acid-KI in a 5.0molL^–1 HCl solution. The accuracy of the proposed method was evaluated by using certified reference materials of biological samples, and the method was used to determine the content of arsenic in fish and coffee beans.     

Chiral separation of omeprazole and several related benzimidazoles using supercritical fluid chromatography

A study of the enantiomeric separation of omeprazole and several related benzimidazoles, using supercritical fluid chromatography (SFC), on the amylose based column Chiralpak AD is presented in this work. The effect of the organic modifier as well as temperature on the retention and enantioresolution was investigated. Alcohol-type modifiers provided the best results, allowing the enantiomeric separation of all the compounds studied with resolutions that were in most cases higher than 2, and analysis times lower than 10 minutes. An investigation of the temperature effect revealed that the isoelution temperature was below the working temperature range in only two cases, and hence it was better to work at the highest temperature permitted.     

Fast atom bombardment mass spectrometry of neutral methanide and ionic carbene platinum(II) derivatives

The fast atom bombardment mass spectra of a series of neutral methanide and ionic carbene platinum(II) complexes of formula dPePtL₂ and [dPePt(LH)₂](BF₄)₂ (dPe = (C₆H₅)₂PCH₂CH₂P(C₆H₅)₂; L = ? C(OCH₃)-NCH₃, ? C(OCH₃) ? NC₆H₁₁, ? C(OCH₃) ? NC₆H₄p ? CH₃), respectively are reported. Glycerol, 3-mercapto-1,2-propanediol, bis (2-hydroxyethyl)sulphide, 3-nitrobenzyl alcohol, and 2,4-di-tert-pentylphenol have been used as matrices. Neutral and ionic derivatives containing the same ligand behave similarly and give the same quasi-molecular [dPePtL(L + H)]⁺ ion by different primary processes. Stepwise breakdown of the ligands L with retention or further loss of atoms or molecules of hydrogen is observed for all these complexes, followed by ejection of radicals from the dPe ligand. Elimination of CH₃OH from [dPePtL(L + H)]⁺ also occurs. The highest ionic yields of both neutral methanide and ionic carbene complexes are observed in 3-mercapto-1,2-propanediol, in bis(2-hydroxyethyl)sulphide, and in 3-nitrobenzyl alcohol with respect to glycerol. The [dPePt(LH)₂]²⁺ doubly charged ions are present in the spectra obtained with 3-nitrobenzyl alcohol and are rather strong when L is ? C(OCH₃) ? NCH₃ and ? C(OCH₃) ? NC₆H₄p ? CH₃. Substitution of ligands L with a molecule or with a fragment of a sulphur containing matrix takes place very seldom with this series of complexes.     

Mixed pseudohalide complexes of copper(II). Crystal and molecular structure of [Cu(N3)(NCS)(tmen)] n and of [Cu(N3)(NCO)(tmen)]2 (tmen = N,N,N′,N′-tetramethylethylenediamine)

The compounds [Cu(N₃)(NSC)(tmen)]_n (1), [Cu(N₃)(NCO)(tmen)]_n (2) and [Cu(N₃)(NCO)(tmen)]₂ (3) (tmen=N,N,N′,N′-tetramethylethylenediamine) were synthesized and studied by i.r. spectroscopy. Single crystals of compounds (1) and (3) were obtained and characterized by X-ray diffraction. The structure of compound (1) consists of neutral chains of copper(II) ions bridged by a single azido ligand showing the asymmetric end-to-end coordination fashion. Each copper ion is also surrounded by the other three nitrogen atoms; two from one N,N,N′,N′-tetramethylethylenediamine and one from a terminal bonded thiocyanate group. Compound (2) decomposes slowly in acetone and the product formed [Cu(N₃)(NCO)(tmen)]₂ (3) crystallizes in the monoclinic system (P2₁). The structure of (3) consists of dimeric units in which the Cu atoms are penta-coordinated and connected by μ(1,3) bridging azido and cyanate ligands. In both cases the five coordinated atoms give rise to a slightly distorted square-based pyramid coordination geometry at each copper ion. The thermal behavior of [Cu(N₃)(NSC)(tmen)]_n (1) and [Cu(N₃)(NCO)(tmen)]_n (2) were investigated and the final decomposition products were identified by X-ray powder diagrams.     

SmCP-networked films obtained by in situ photopolymerization of neat reactive banana-shaped liquid crystals

The synthesis and characterization of reactive banana-shaped compounds have been carried out, and their ability to be photopolymerized in their SmCP mesophase has been assessed. The presence of a SmCP liquid crystalline phase in these compounds has been confirmed by X-ray studies. The polymerization of these molecules has been demonstrated by calorimetric techniques as well as by the preparation and characterization of SmCP-ordered free films that are mechanically stable at room temperature. Furthermore, polymerized films exhibit second harmonic generation activity at room temperature in the absence of an electric field.     

bryA: an unusual modular polyketide synthase gene from the uncultivated bacterial symbiont of the marine bryozoan Bugula neritina

"Candidatus Endobugula sertula," the uncultivated bacterial symbiont of Bugula neritina, is the proposed source of the bryostatin family of anticancer compounds. We cloned a large modular polyketide synthase (PKS) gene complex from "Candidatus Endobugula sertula" and characterized one gene, bryA, which we propose is responsible for the initial steps of bryostatin biosynthesis. Typical PKS domains are present. However, acyltransferase domains are lacking in bryA, and beta-ketoacyl synthase domains of bryA cluster with those of PKSs with discrete, rather than integral, acyltransferases. We propose a model for biosynthesis of the bryostatin D-lactate starter unit by the bryA loading module, utilizing atypical domains homologous to FkbH, KR, and DH. The bryA gene product is proposed to synthesize a portion of the pharmacologically active part of bryostatin and may be useful in semisynthesis of clinically useful bryostatin analogs.     

Laser flash photolysis in a O3/Cl2 mixture at 266 nm in a very low-pressure flow system

The laser flash photolysis in a very low-pressure flow system with mass spectrometry detection technique was developed for the study of oxidation reactions of chlorofluorocarbons. In this work, we have studied the UV photolysis of O3 in the presence of Cl2 at room temperature, which presents two catalytic cycles of O3 depletion with efficiencies dependent on the partial pressures in the photoreactor. The ozone dissociation was initiated with fourth harmonic pulses of a Nd:YAG laser. The detection of the reactants and the final and intermediate reaction products was performed with real-time mass spectrometry. The variations of the O3, Cl2 and ClO concentration were measured. The equations system associated to a proposed kinetic scheme was solved numerically and excellent agreement with the experimental results was obtained. The results from this work allowed the determination of the wall loss rates of the O(1D), Cl and ClO radicals.