Gas-phase deprotonation of arylalkylamines. A collision-induced dissociation study

The collision-induced dissociation (CID) of deprotonated arylalkylamines of general formula R(1)C(6)H(4)CHR(2)CH(2)NR(3)(2) (where R(1) = H, OH, F or NO(2); R(2) = H or OH; R(3) = H or CH(3)) generated by negative chemical ionization with H(2)O and D(2)O as ionizing reagents, is discussed. The negative chemical ionization mass spectra show that, in the absence of a hydroxy group in the aromatic ring, deprotonation takes place at the benzylic position whereas the proton is lost from the OH group when present. The nitro compound forms only M(-.) ions. The CID spectra of the deprotonated molecules show that fragmentations are strongly dependent on the structural features of the molecules, namely the presence or absence of substituents in the aromatic ring or aliphatic chain. Copyright 1999 John Wiley & Sons, Ltd.     

Isolation of NO(3)(-)-N as 1-phenylazo-2-naphthol (Sudan-1) for measurement of delta(15)N

The conversion of nitrate (NO(3)(-)) to 1-phenylazo-2-naphthol (Sudan-1) has been examined as a method for natural abundance measurement of delta(15)N of NO(3)(-). The reaction results in dilution of NO(3)(-)-N with only one reagent-derived N and the product is readily concentrated from dilute samples by reverse phase chromatography. There is systematic isotopic fractionation during the reaction, but this can be allowed for by analysing known NO(3)(-) standards along with each sample set. Sudan-1 prepared from surface water samples containing approximately 50 &mgr;g NO(3)(-)-N can be analysed by automated continuous flow isotope ratio mass spectrometry with a precision of 0.2 per thousand (one standard deviation) and the accuracy is not affected by interference from other nitrogenous species in the sample or reagents. Copyright 1999 John Wiley & Sons, Ltd.     

On the Design of Zinc‐Finger Models with Cyclic Peptides Bearing a Linear Tail

Cyclic peptides with a linear tail (CPLT) have been successfully used to model two zinc fingers (ZFs) adopting the treble‐clef‐ and loosened zinc‐ribbon folds. In this article, we examine the factors that may influence the design of such ZF models: mutations in the sequence, size of the cycle, and size of the tail. For this purpose, several peptides derived from the CPLT‐based models of the treble‐clef‐ and loosened zinc‐ribbon ZF were synthesized and studied. CPLT‐based models appear to be robust toward mutations, accommodate various cycle sizes, and are sensible to the size of the linking region of the tail located between the cycle and the coordinating amino acids. Based on these criteria, we describe the design of a new CPLT‐based model for the zinc‐ribbon ZFs, L_ZR, and compare it to a linear analogue, L_ZR^lin. The model complex Zn ? L_ZR is able to fold correctly around the metal ion contrary to Zn ? L_ZR^lin, suggesting that CPLT‐based models are more likely to yield structurally meaningful models of ZF sites than linear peptide models. Finally, we draw some rules that could allow the design of new CPLT‐based metallopeptides with a controlled fold.     

Anwendung der Methodik der radioaktiven Markierung zur Bestimmung von Zerspanbarkeit und Verschleißverhalten der Werkzeugstähle beim Schneidvorgang

Die grundlegende Bedingung zur Gewinnung geplanter Produktionseffekte bei der spanabhebenden Verformung ist die Einhaltung einer vorgegebenen Härte der Werkzeuge, d. h. eine garantierte Qualität. In dem vorliegenden Artikel wird über Versuche gesprochen, welche auf dem Vergleich von Eigenschaften der Verschleißfestigkeit als Schneidwerkzeuge und der Zerspanbarkeit verschiedener Sorten von Werkzeugstahl beruhen. Bei den Zerspanbarkeitsversuchen wurden einheimische wie auch ausländische Sintercarbido untersucht. Danach wurden solche Sorten ausgewählt, die für unsere Zwecke am nützlichsten schienen. Zweck der Untersuchungen war auch das Festsetzen technischer Forderungen und Abnahmemethoden für Werkzeugstahl.     

An improved replica-exchange sampling method: temperature intervals with global energy reassignment

In a molecular dynamics (MD) simulation, representative sampling over the entire phase space is desired to obtain an accurate canonical distribution at a given temperature. For large molecules, such as proteins, this is problematic because systems tend to become trapped in local energy minima. The extensively used replica-exchange molecular dynamics (REMD) simulation technique overcomes this kinetic-trapping problem by allowing Boltzmann-weighted configuration exchange processes to occur between numerous thermally adjacent and compositionally identical simulations that are thermostated at sequentially higher temperatures. While the REMD method provides much better sampling than conventional MD, there are two substantial difficulties that are inherent in its application: (1) the large number of replicas that must be used to span a designated temperature range and (2) the subsequent long time required for configurations sampled at high temperatures to exchange down for potential inclusion within the low-temperature ensemble of interest. In this work, a new method based on temperature intervals with global energy reassignment (TIGER) is presented that overcomes both of these problems. A TIGER simulation is conducted as a series of short heating-sampling-quenching cycles. At the end of each cycle, the potential energies of all replicas are simultaneously compared at the same temperature using a Metropolis sampling method and then globally reassigned to the designated temperature levels. TIGER is compared with regular MD and REMD methods for the alanine dipeptide in water. The results indicate that TIGER increases sampling efficiency while substantially reducing the number of central processing units required for a comparable conventional REMD simulation.     

DNA vaccine containing the mycobacterial hsp65 gene prevented insulitis in MLD-STZ diabetes

Background  

Our group previously demonstrated that a DNA plasmid encoding the mycobacterial 65-kDa heat shock protein (DNA-HSP65) displayed prophylactic and therapeutic effect in a mice model for tuberculosis. This protection was attributed to induction of a strong cellular immunity against HSP65. As specific immunity to HSP60 family has been detected in arthritis, multiple sclerosis and diabetes, the vaccination procedure with DNA-HSP65 could induce a cross-reactive immune response that could trigger or worsen these autoimmune diseases.     

Enzymes with an heterodinuclear iron–manganese active site: Curiosity or necessity?

This review analyzes the currently available data on true and purported FeMn enzymes with a particular emphasis on their specific physical properties. The characterization of the purple acid phosphatase from sweet potato and the current view of the hydrolysis mechanism are presented. The controversy associated with the discovery of the class Ic ribonucleotide reductase from Chlamydia trachomatis is discussed in the light of its extensive reactivity and physical studies. The amine oxygenase AurF is presented also albeit it is not exactly an FeMn enzyme but its case is particularly enlightening of the difficulties in assessing which is the right metal of an enzyme. Then, the very recent emergence of a new class of FeMn oxidases is highlighted. Lastly, examination of potential model compounds reveals the paucity of reported examples and therefore the need to develop this area. General considerations on biologically active metals and their substitution in hydrolases and redox active proteins are provided and possible reasons for the choice of the peculiar FeMn active site over the more classical diiron center are considered.