Nitroxide bound beta-cyclodextrin: is there an inclusion complex?

236CDTIPNO, a derivative of the persistent free radical TIPNO (1,1-dimethylethyl 2-methyl-1-phenylpropyl nitroxide) covalently bound to a permethylated-beta-cyclodextrin, was prepared. Self-association of 236CDTIPNO in water was proved by solvent- and competition-dependent EPR spectroscopy experiments with 2,6-di-O-Me-beta-cyclodextrin (DIMEB) and permethylated-beta-cyclodextrin (TRIMEB) as external hosts competing for accommodation of the TIPNO moiety. Temperature-dependent EPR spectra were simulated with a novel two-dimensional (field-temperature) EPR simulation program that afforded a full determination of the thermodynamic parameters characterizing the rate constants of the self-inclusion reaction derived from Arrhenius and Eyring models. This method allows separating the line broadening effects due to relaxation from a chemical exchange, even if only the fast exchange regime is accessible experimentally. The activation parameters for the forward and backward steps were consistent with an equilibrium between a nonassociated form and a weakly associated form, with activation free enthalpies for each reaction of around 34 kJ.mol(-)(1).     

SPR-based immunocapture approach to creating an interfacial sensing architecture: mapping of the MRS18-2 binding site on retinoblastoma protein

Biosensor technologies based on optical readout are widely used in protein–protein interaction studies. Here we describe a fast and simple approach to the creation of oriented interfacial architectures for surface plasmon resonance (SPR) transducers, based on conventional biochemical procedures and custom reagents. The proposed protocol permits the oriented affinity-capture of GST fusion proteins by a specific antibody which is bound to protein A, which in turn has been immobilized on the transducer surface (after the surface has been modified by guanidine thiocyanate). The applicability of the method was demonstrated by studying the interaction between retinoblastoma tumor suppressor protein (pRb) and MRS18-2 proteins. The formation of the pRb–MRS18-2 protein complex was examined and the pRb binding site (A-box–spacer–B-box) was mapped. We have also shown that MRS18-2, which was detected as the Epstein–Barr virus-encoded EBNA-6 binding partner using the yeast two-hybrid system, binds to pRb in GST pull-down assays.     

Bioelectrocatalysis in ionic liquids. Examining specific cation and anion effects on electrode-immobilized cytochrome c

Cytochrome c immobilized on alkylthiol self-assembled monolayers exhibits a characteristic Fe(II)/Fe(III) redox signal that is lost when exposed to ionic liquids composed of a butylimidazolium cation combined with either hexafluorophosphate or bis(trifluoromethylsulfonyl)imide anion. In this study it was shown that exposure to the aqueous solubilized ionic liquid components, butyl-, hexyl-, and octyl-imidazolium cations and hexafluorophosphate, tetrafluoroborate, and bis(trifluoromethylsulfonyl)imide anions, resulted in partial electrochemical signal loss. Absorbance and fluorescence measurements showed that signal loss due to the cationic ionic liquid component followed a different mechanism than that of the anionic component. Although a portion of the signal was recoverable, irreversible signal loss also occurred in both cases. The source of the irreversible component is suggested to be the loss of protein secondary structure through complexation between the ionic liquid components and the protein surface residues. The reversible electrochemical signal loss is likely due to interfacial interactions imposed between the electrode and the cytochrome heme group. The influence of the amount of exposed surface residues was explored with a simplified model protein, microperoxidase-11.     

On lattice-ordered commutative semigroups

Decompositions of elements into intersections of primal elements and into intersections of p-components are studied in certain lattice-ordered commutative semigroups, by making use of the new development in commutative ideal theory without finiteness conditions, due to Fuchs-Heinzer-Olberding [7]. Several results concerning ideals can be phrased as theorems in abstract ideal theory.The intersections we consider are in general not irredundant, and the associated prime elements are not unique. However, one can establish a canonical intersection that is often irredundant with uniquely determined associated primes.     

A novel tunable aromatic bromination method using alkyl bromides and sodium hydride in DMSO

Aromatic bromination on various aromatic systems with different substitutions was performed in the presence of alkyl bromide and sodium hydride in DMSO. Mono-bromination on a wide range of substrates was achieved by selecting proper alkyl bromides and controlling its amount. Further bromination could happen with more active alkyl bromides and additional amount of bromides and sodium hydride. The yields ranged from moderate to excellent. In addition, reaction mechanism was postulated to explain our observations.     

Easy formation of diels-alder cycloadducts between furans and α,β-unsaturated aldehydes and ketones at normal pressure.

The K-10 bentonite clay doped with Fe^III or, even better AlCl₃ alone catalyse the Diels-Alder reaction between furan or dimethyl-2,5-furan and either acrolein or methyl- vinylketone. The cycloadducts are obtained with isolated yields in the range 20–81%.     

Fast atom bombardment and tandem mass spectrometry of quaternary pyridinium salt-type tryptophan derivatives

Fast atom bombardment and collision-induced dissociation tandem mass spectrometry were used to study the fragmentation of quaternary pyridinium salt-type amides of tryptophan (α-amino-3-indolepropionic acid) esters and their analogs which incorporate the α-nitrogen into the quaternary pyridinium structure. By cleavage directly at the pyridine nitrogen, the 1-alkyl-substituted nicotinamides decompose exclusively to a carbocation, which then becomes the intermediate to further fragments. Rearrangement of the 3-indolepropionate-2-yl carbocations may involve a five- to seven-membered ring expansion, which generates alternative fragmentation pathways; the formation of an even-electron and a radical cation, respectively. In trigonellyl amide-type tryptophan derivatives, fragmentation of the pyridinium ion proceeds on multiple pathways induced by the positive charge which may not be localized on the quaternary nitrogen, and isomerization to a dihydropyridinyl structure is probably involved. Besides the formation of protonated nicotinamide and alkene from tryptophan amides that contain methylene or ethylene units between the amino and the quaternary pyridinium nitrogens, a fragmentation route leading to the carbocation identical with that of the 1-alkyl-substituted nicotinamides has also been revealed.