Tetrahydropyridine (THP) ring expansion under the action of activated terminal alkynes. The first synthesis and X-ray crystal structure of tetrahydropyrimido[4,5-d]azocines

Tetrahydropyridopyrimidines (THPPm) 1-3 underwent tandem cleavage-cyclization piperidine ring enlargement under the action of terminal activated alkynes to produce tetrahydropyrimido[4,5-d]azocines 4-7 in good preparative yields. The latter compounds are representatives of a new heterocyclic system.     

Tandem enlargement of the tetrahydropyridine ring in 1-aryl-tetrahydroisoquinolines using activated alkynes—a new and effective synthesis of benzoazocines

Tetrahydroisoquinolines 3a-e underwent piperidine ring enlargement under the action of activated alkynes, giving benzoazocines 4, 5 and 7-11 in high yields.     

Defect evolution in block copolymer thin films via temporal phase transitions

We study the details of the defect dynamics in thin films of a cylinder-forming polystyrene-block-polybutadiene (SB) diblock copolymer melt. The high temporal resolution of in-situ scanning force microscopy (SFM) uncovers elementary dynamic processes of structural rearrangements on time scales not accessible so far. Short-term interfacial undulations and the formation of transient phases (spheres, perforated lamellae, and lamellae) are observed. We demonstrate that the well-known structural defects are annihilated by short-term phase transitions into what may be considered excited states. These temporary phase transitions are reproduced in simulations based on dynamic self-consistent field theory. We discuss the role of the observed structural evolution in the context of the equilibrium phase behavior in SB thin films.     

Evolutionary patterns of retinal-binding pockets of type I rhodopsins and their functions

Genome sequencing projects resulted in the identification of a large number of new sequence homologs of archaeal rhodopsins in marine bacteria, fungi, and unicellular algae. It is an important task to unambiguously predict the functions of these new rhodopsins, as it is difficult to perform individual experiments on every newly discovered sequence. The transmembrane segments of rhodopsins have similar three-dimensional structures where the seven transmembrane helices form a tightly packed scaffold to accommodate a covalently bound retinal. We use geometric computations to accurately define the retinal-binding pockets in high-resolution structures of rhodopsins and to extract residues forming the wall of the retinal-binding pocket. We then obtain a tree defining the functional relationship of rhodopsins based on the short sequences of residues forming the wall of the retinal-binding pocket concatenated from the primary sequence, and show that these sequence fragments are often sufficient to discriminate phototactic vs transporting function of the bacterial and unicellular algal rhodopsins. We further study the evolutionary history of retinal-binding pockets by estimating the pocket residue substitution rates using a Bayesian Monte Carlo method. Our findings indicate that every functional class of rhodopsins has a specific allowed set of fast-rate amino acid substitutions in the retinal-binding pocket that may contribute to spectral tuning or photocycle modulation. The substitution rates of the amino acid residues in a putative retinal-binding pocket of marine proteorhodopsins together with the clustering of pocket sequences indicate that green-absorbing and blue-absorbing proteorhodopsins have similar function. Our results demonstrate that the evolutionary patterns of the retinal-binding pockets reflect the functional specificity of the rhodopsins. The approach we describe in this paper may be useful for large-scale functional prediction of rhodopsins.     

A novel cascade Kröhnke condensation—an intramolecular nucleophilic cyclization approach toward annulated chromenes

A one-pot protocol toward previously unreported derivatives of chromeno[2′,2′:4,5]imidazo[2,1-a]isoquinoline via a cascade reaction of isoquinoline-derived immonium salts and α-hydroxy aromatic aldehydes is elaborated.     

Influence of ordering in porous TiO2 layers on electron diffusion

Layers of porous TiO(2) fabricated by electrophoretic deposition at different temperatures with subsequent sintering in air were investigated by transient photocurrent measurements in aqueous electrolyte. The effective diffusion coefficient of excess electrons changed between 1.6 x 10(-5) and 1.4 x 10(-4) cm(2)/s depending strongly on the solution temperature during the TiO(2) layer deposition. Characterization, in terms of average degree of preferred orientation, shows that low deposition temperature results in orientation of the nanocrystals forming the porous film. Consequently, the increase of effective diffusion coefficient is attributed to a higher degree of ordering in the nanoporous TiO(2) layer.     

Quantum-chemical simulation and experimental study of some magnetic nanoparticles stabilized in fluid suspensions by using organic coating

Abstract

The biomedical applications of magnetic nanoparticles require the surface modification with organic, hydrophilic molecules, able to ensure the stability of the resulted colloidal suspensions. We present the quantum mechanical approach of two molecules developing stable interfaces with magnetic Co_0.5Fe_2.5O₄ nanoparticles. Sodium oleate, and citric acid, ensuring steric and respectively electrostatic stabilization are comparatively analyzed. The roles of dipole moment and frontier orbitals energies were emphasized to better understanding of some interface phenomena for the optimization of magnetic nanoparticle suspension preparation. Further, practical yielding of colloidal Co_0.5Fe_2.5O₄ nanoparticles by coating with sodium oleate and respectively with citric acid is discussed.     

Probing of liquids by Bessel light beams under conditions of acousto-optical interactions

The acousto-optical interactions of Bessel and Gaussian light beams with the ultrasonic field in liquids under the condition of Raman-Nath diffraction for the standing-wave mode are experimentally investigated. The main differences of acousto-optical interactions for Bessel and Gaussian light beams are revealed. The various phenomena of refraction and focusing of Bessel beam in liquids owing to sound-field spatial modulation are demonstrated.     

Failure of immunocompetitive capillary electrophoresis assay to detect disease-specific prion protein in buffy coat from humans and chimpanzees with Creutzfeldt-Jakob disease

The emergence of a new environmentally caused variant of Creutzfeldt-Jakob disease (vCJD), the result of food-born infection by the causative agent of bovine spongiform encephalopathy (BSE), has stimulated research on a practical diagnostic screening test. The immunocompetitive capillary electrophoresis (ICCE) assay has been reported to detect disease-specific, proteinase-resistant prion protein (PrPres) in the blood of scrapie-infected sheep. We have applied this method to blood from CJD-infected chimpanzees and humans. The threshold of detection achieved with our ICCE was 0.6 nM of synthetic peptide corresponding to the prion protein (PrP) C-terminus, and 2 nM of recombinant human PrP at the optimized conditions. However, the test was unable to distinguish between extracts of leucocytes from healthy and CJD-infected chimpanzees, and from healthy human donors and patients affected with various forms of CJD. Thus, the ICCE assay as presently performed is not suitable for use as a screening test in human transmissible spongiform encephalopathies (TSEs).     

Ruthenium complexes of easily accessible tridentate ligands based on the 2-aryl-4,6-bis(2-pyridyl)-s-triazine motif: absorption spectra, luminescence properties, and redox behavior

A family of tridendate ligands 1 a-e, based on the 2-aryl-4,6-di(2-pyridyl)-s-triazine motif, was prepared along with their hetero- and homoleptic Ru(II) complexes 2 a-e ([Ru(tpy)(1 a-e)](2+); tpy=2,2':6',2"-terpyridine) and 3 a-e ([(Ru(1 a-e)(2)](2+)), respectively. The ligands and their complexes were characterized by (1)H NMR spectroscopy, ES-MS, and elemental analysis. Single-crystal X-ray analysis of 2 a and 2 e demonstrated that the triazine core is nearly coplanar with the non-coordinating ring, with dihedral angles of 1.2 and 18.6 degrees, respectively. The redox behavior and electronic absorption and luminescence properties (both at room temperature in liquid acetonitrile and at 77 K in butyronitrile rigid matrix) were investigated. Each species undergoes one oxidation process centered on the metal ion, and several (three for 2 a-e and four for 3 a-e) reduction processes centered on the ligand orbitals. All compounds exhibit intense absorption bands in the UV region, assigned to spin-allowed ligand-centered (LC) transitions, and moderately intense spin-allowed metal-to-ligand charge-transfer (MLCT) absorption bands in the visible region. The compounds exhibit relatively intense emissions, originating from triplet MLCT levels, both at 77 K and at room temperature. The incorporation of triazine rings and the near planarity of the noncoordinating ring increase the luminescence lifetimes of the complexes by lowering the energy of the (3)MLCT state and creating a large energy gap to the dd state.