High-throughput approaches towards the definitive identification of pharmaceutical drug metabolites. 1. Evidence for an ortho effect on the fragmentation of 4-benzenesulfinyl-3-methylphenylamine using electrospray ionisation mass spectrometry

A 50 m/z unit loss from protonated 4-benzenesulfinyl-3-methylphenylamine has been observed and investigated using electrospray ionisation quadrupole ion trap mass spectrometry (ESI-QIT-MS). It was hypothesised that the specific fragmentation was affected by the presence of an ortho methyl group in relation to the sulfoxide functionality, i.e. an ortho effect influences the preferred dissociation pathway. This was because the des-methyl homologue did not display a 50 m/z unit loss. This fragmentation was shown to be a two-step process with sequential losses of a hydroxyl radical and a thiol radical. Molecular modelling calculations showed that the most favourable site of protonation for 4-benzenesulfinyl-3-methylphenylamine was the sulfoxide oxygen, which would facilitate the loss of a hydroxyl radical. Subsequent deuterium-exchange experiments confirmed that the loss was a hydroxyl radical and afforded definitive assignment of the site of protonation. Furthermore, the involvement of a single exchangeable hydrogen atom in the overall 50 m/z unit loss was demonstrated. Thus, supportive evidence was provided for the involvement of the ortho methyl group in the second stage of the fragmentation, leading to the loss of the thiol radical. Accurate mass measurements, performed using electrospray ionisation Fourier transform ion cyclotron resonance mass spectrometry (ESI-FTICR-MS), verified the elemental formulae of the individual losses. The ion structure following the 50 m/z unit loss was proposed to be a protonated aminofluorene and was supported by comparing the product ion spectrum of commercially available protonated 2-aminofluorene with the MS4 data of protonated 4-benzenesulfinyl-3-methylphenylamine. Fragmentation mechanisms are proposed. The relevance of the loss with regards to pharmaceutical drug metabolite identification is discussed.     

On the reciprocity relationship between direct field radiation and diffuse reverberant loading

This analysis is concerned with the derivation of a "diffuse field" reciprocity relationship between the diffuse field excitation of a connection to a structural or acoustic subsystem and the radiation impedance of the connection. Such a relationship has been derived previously for connections described by a single degree of freedom. In the present work it is shown that the diffuse-field reciprocity relationship also arises when describing the ensemble average response of connections to structural or acoustic subsystems with uncertain boundaries. Furthermore, it is shown that the existing diffuse-field reciprocity relationship can be extended to encompass connections that possess an arbitrary number of degrees of freedom. The present work has application to (i) the calculation of the diffuse field response of structural-acoustic systems modeled by Finite Elements, Boundary Elements, and Infinite Elements; (ii) the general calculation of the Coupling Loss Factors employed in Statistical Energy Analysis (SEA); and (iii) the derivation of an alternative analysis method for describing the dynamic interactions of coupled subsystems with uncertain boundaries (a generalized "boundary" approach to SEA).     

Identification of a type III thioesterase reveals the function of an operon crucial for Mtb virulence

Rv0098 is part of an operon, Rv0096-Rv0101, from Mycobacterium tuberculosis (Mtb) that is essential for Mtb's survival in mouse macrophages. This operon also contains an acyl carrier protein and one of the only two nonribosomal peptide synthases in Mtb. Rv0098 is annotated in the genome as a hypothetical protein and was proposed to be an acyl-coenzyme A (CoA) dehydratase. The structure of Rv0098, together with subsequent biochemical analysis, indicated that Rv0098 is a long-chain fatty acyl-CoA thioesterase (FcoT). However, FcoT lacks a general base or a nucleophile that is always found in the catalytic site of type II and type I thioesterases, respectively. The active site of Mtb FcoT reveals the structural basis for its substrate specificity for long-chain acyl-CoA and allows us to propose a catalytic mechanism for the enzyme. The characterization of Mtb FcoT provides a putative function of this operon that is crucial for Mtb pathogenicity.     

Slow Magnetic Relaxation and Single‐Molecule Toroidal Behaviour in a Family of Heptanuclear {CrIIILnIII6} (Ln=Tb,Ho, Er) Complexes

The synthesis, magnetic properties, and theoretical studies of three heterometallic {Cr^IIILn^III₆} (Ln=Tb, Ho, Er) complexes, each containing a metal topology consisting of two Ln₃ triangles connected via a Cr^III linker, are reported. The {CrTb₆} and {CrEr₆} analogues display slow relaxation of magnetization in a 3000 Oe static magnetic field. Single‐crystal measurements reveal opening up of the hysteresis loop for {CrTb₆} and {CrHo₆} molecules at low temperatures. Ab initio calculations predict toroidal magnetic moments in the two Ln₃ triangles, which are found to couple, stabilizing a con‐rotating ferrotoroidal ground state in Tb and Ho examples and extend the possibility of observing toroidal behaviour in non Dy^III complexes for the first time.     

Large Hexadecametallic {MnIII–LnIII} Wheels: Synthesis,Structural, Magnetic,and Theoretical Characterization

The synthesis, gas sorption studies, magnetic properties, and theoretical studies of new molecular wheels of core type {Mn^III₈Ln^III₈} (Ln=Dy, Ho, Er, Y and Yb), using the ligand mdeaH₂, in the presence of ortho‐toluic or benzoic acid are reported. From the seven wheels studied the {Mn₈Dy₈} and {Mn₈Y₈} analogues exhibit SMM behavior as determined from ac susceptibility experiments in a zero static magnetic field. From DFT calculations a S=16 ground state was determined for the {Mn₈Y₈} complex due to weak ferromagnetic Mn^III–Mn^III interactions. Ab initio CASSCF+RASSI‐SO calculations on the {Mn₈Dy₈} wheel estimated the Mn^III–Dy^III exchange interaction as ?0.1 cm^?1. This weak exchange along with unfavorable single‐ion anisotropy of Dy^III/Mn^III ions, however, led to the observation of SMM behavior with fast magnetic relaxation. The orientation of the g‐anisotropy of the Dy^III ions is found to be perpendicular to the plane of the wheel and this suggests the possibility of toroidal magnetic moments in the cluster. The {Mn₈Ln₈} clusters reported here are the largest heterometallic Mn^IIILn^III wheels and the largest {3d–4f} wheels to exhibit SMM behavior reported to date.     

Physical consequences of a nonparametric uncertainty model in structural dynamics

One of the main claims of the nonparametric model of random uncertainty introduced by Soize (2000) [3] is its ability to account for model uncertainty. The present paper investigates this claim by examining the statistics of natural frequencies, total energy and underlying dispersion equation yielded by the nonparametric approach for two simple systems: a thin plate in bending and a one-dimensional finite periodic mass–spring chain. Results for the plate show that the average modal density and the underlying dispersion equation of the structure are gradually and systematically altered with increasing uncertainty. The findings for the mass–spring chain corroborate the findings for the plate and show that the remote coupling of nonadjacent degrees of freedom induced by the approach suppresses the phenomenon of mode localization. This remote coupling also leads to an instantaneous response of all points in the chain when one mass is excited. In the light of these results, it is argued that the nonparametric approach can deal with a certain type of model uncertainty, in this case the presence of unknown terms of higher or lower order in the governing differential equation, but that certain expectations about the system such as the average modal density may conflict with these results.     

Rigid quantum Monte Carlo simulations of condensed molecular matter: water clusters in the n=2-->8 range

The numerical advantage of quantum Monte Carlo simulations of rigid bodies relative to the flexible simulations is investigated for some simple systems. The results show that if high frequency modes in molecular condensed matter are predominantly in the ground state, the convergence of path integral simulations becomes nonuniform. Rigid body quantum parallel tempering simulations are necessary to accurately capture thermodynamic phenomena in the temperature range where the dynamics are influenced by intermolecular degrees of freedom; the stereographic projection path integral adapted for quantum simulations of asymmetric tops is a significantly more efficient strategy compared with Cartesian coordinate simulations for molecular condensed matter under these conditions. The reweighted random series approach for stereographic path integral Monte Carlo is refined and implemented for the quantum simulation of water clusters treated as an assembly of rigid asymmetric tops.     

Novel 3',6'-anhydro and N12,N13-bridged glycosylated fluoroindolo[2,3-a]carbazoles as topoisomerase I inhibitors. Fluorine as a leaving group from sp3 carbon

[reaction: see text] Both 6'- and 4'-fluoro-glycosylated indolo[2,3-a]carbazoles are substrates for base-induced loss of fluorine as a leaving group from sp3 carbon. In the case of alpha-N-glycosylated substrate 3, loss of fluorine from the 6'-position leads to 3,6-anhydroglucose analogue 1. A novel N12,N13-bridged sugar analogue 2 results from loss of 4'-fluorine from beta-N-glycosylated analogue 4. Both analogues 1 and 2 display topo I inhibitory potencies similar to camptothecin.