Characterization of the Intermediate in and Identification of the Repair Mechanism of (6‐4) Photolesions by Photolyases

Quantum mechanics/molecular mechanics calculations are employed to assign previously recorded experimental spectroscopic signatures of the intermediates occurring during the photo‐induced repair of (6‐4) photolesions by photolyases to specific molecular structures. Based on this close comparison of experiment and theory it is demonstrated that the acting repair mechanism involves proton transfer from the protonated His365 to the N3′ nitrogen of the lesion, which proceeds simultaneously with intramolecular OH transfer along an oxetane‐like transition state.     

Atmospheric plasma treatment of porous polymer constructs for tissue engineering applications

Porous 3D polymer scaffolds prepared by TIPS from PLGA (53:47) and PS are intrinsically hydrophobic which prohibits the wetting of such porous media by water. This limits the application of these materials for the fabrication of scaffolds as supports for cell adhesion/spreading. Here we demonstrate that the interior surfaces of polymer scaffolds can be effectively modified using atmospheric air plasma (AP). Polymer films (2D) were also modified as control. The surface properties of wet 2D and 3D scaffolds were characterised using zeta-potential and wettability measurements. These techniques were used as the primary screening methods to assess surface chemistry and the wettability of wet polymer constructs prior and after the surface treatment. The surfaces of the original polymers are rather hydrophobic as highlighted but contain acidic functional groups. Increased exposure to AP improved the water wetting of the treated surfaces because of the formation of a variety of oxygen and nitrogen containing functions. The morphology and pore structure was assessed using SEM and a liquid displacement test. The PLGA and PS foam samples have central regions which are open porous interconnected networks with maximum pore diameters of 49 microm for PLGA and 73 microm for PS foams.     

Investigation of polypropylene degradation during melt processing using a profluorescent nitroxide probe: A laboratory-scale study

Degradation of polypropylene (PP) during melt processing was studied using a novel profluorescence technique. The profluorescent nitroxide probe, 1,1,3,3-tetramethyldibenzo[e,g]isoindolin-2-yloxyl (TMDBIO) was added to PP during melt processing to act as a sensor for carbon-centred radicals. Trapping of carbon-centred radicals, formed during degradation of PP, led to an increase in fluorescence emission from TMDBIO adducts. Through analysis of viscosity changes during processing cumulative chain scission degradation was estimated. At processing temperatures of 210 °C or below, fluorescence emission from TMDBIO adducts could be correlated with cumulative chain scissions when the number of chain scissions was small. At higher temperatures, a correlation was not observed most probably due to radical-trap instability rather than decomposition of the TMDBIO. Thus, TMDBIO may be used as a profluorescent sensor for degradation of PP during melt processing when the processing temperature is 210 °C or below.     

Branch and bound algorithm with applications to robust stability

We discuss a branch and bound algorithm for global optimization of NP-hard problems related to robust stability. This includes computing the distance to instability of a system with uncertain parameters, computing the minimum stability degree of a system over a given set of uncertain parameters, and computing the worst case \(H_\infty \) norm over a given parameter range. The success of our method hinges (1) on the use of an efficient local optimization technique to compute lower bounds fast and reliably, (2) a method with reduced conservatism to compute upper bounds, and (3) the way these elements are favorably combined in the algorithm.     

Modeling of the rough spherical nanoparticles manipulation on a substrate based on the AFM nanorobot

In this paper, dynamic behavior of the rough spherical micro/nanoparticles during pulling/pushing on the flat substrate has been investigated and analyzed. For this purpose, at first, two hexagonal roughness models (George and Cooper) were studied and then evaluations for adhesion force were determined for rough particle manipulation on flat substrate. These two models were then changed by using of the Rabinovich theory. Evaluations were determined for contact adhesion force between rough particle and flat substrate; depth of penetration evaluations were determined by the Johnson–Kendall–Roberts contact mechanic theory and the Schwartz method and according to Cooper and George roughness models. Then, the novel contact theory was used to determine a dynamic model for rough micro/nanoparticle manipulation on flat substrate. Finally, simulation of particle dynamic behavior was implemented during pushing of rough spherical gold particles with radii of 50, 150, 400, 600, and 1,000 nm. Results derived from simulations of particles with several rates of roughness on flat substrate indicated that compared to results for flat particles, inherent roughness on particles might reduce the rate of critical force needed for sliding and rolling given particles. Given a fixed radius for roughness value and increased roughness height, evaluations for sliding and rolling critical forces showed greater reduction. Alternately, the rate of critical force was shown to reduce relative to an increased roughness radius. With respect to both models, based on the George roughness model, the predicted rate of adhesion force was greater than that determined in the Cooper roughness model, and as a result, the predicted rate of critical force based on the George roughness model was closer to the critical force value of flat particle.     

Double-electromagnetically induced transparency in a Y-type atomic system

We present secondary phase identification studies on Cr doped ZnO nanoparticles prepared by the sol-gel method. X-ray diffraction analysis confirms the formation of chromium oxides and there is found to be an increase of lattice parameter with thermal annealing. Scanning electron microscopic studies show the increase in the crystalline nature and particle size. Optical absorption measurements of the as prepared sample exhibit a strong band at 356 nm due to the free exciton absorption of the ZnO nanoparticles. An absorption band at 277 nm is due to the ³T₁ → ³T₂ transition in Cr⁴⁺ ions which appears only for the annealed samples. Photoluminescence studies show that deep level emission is completely suppressed after Cr₂O₃ formation/thermal annealing. Raman and FTIR spectra reveal formation of the Cr₂O₃ phase. Thermal annealing leads to the increase of crystalline nature which gives an enhancement to the Raman modes.     

The MELBS team winning entry for the EVA2017 competition for spatiotemporal prediction of extreme rainfall using generalized extreme value quantiles

We present our winning entry for the EVA2017 challenge on spatiotemporal prediction of extreme precipitation. The aim of the competition is to predict extreme rainfall quantiles that score as low as possible on the competition error metric. Good or bad predictions are defined only by the metric used. Our methodology was simple and produced accurate predictions under this metric. This outcome emphasizes the importance of cross-validation and identifying model over-fitting.     

β-cyclodextrin-bonded silica particles as novel sorbent for stir bar sorptive extraction of phenolic compounds

A stir bar coated with β-cyclodextrin-bonded-silica (CDS) as novel sorbent has been developed and used to analyze seven phenolic compounds in aqueous samples, followed by thermal desorption and gas chromatography-mass spectrometric detection. Significant parameters affecting sorption process such as the time and temperature of sorption and desorption, ionic strength, pH and stirring rate have been optimized and discussed. The coating has a high thermal stability up to 300°C and long application lifetime (80 times). The porous structure of CDS coating provides high surface area and allows high extraction efficiency. Under the selected conditions, linearity range of 0.1-400 μg/L, limit of quantifications of 0.08-3.3 μg/L and method detection limits of 0.02-1.00 μg/L have been obtained. A satisfactory repeatability (RSD ≤ 6.5, n = 7) with good linearity (0.9975 ≤ r(2) ≤ 0.9996) of results illustrated a good performance of the present method. The recovery of different natural water samples was higher than 81.5%.     

Determination of phenolic compounds in environmental water samples after solid-phase extraction with β-cyclodextrin-bonded silica particles coupled with a novel liquid-phase microextraction followed by gas chromatography-mass spectrometry

A novel approach for the sample pre-treatment and determination of eight phenolic compounds in environmental water samples has been developed by hyphenating solid-phase extraction (SPE) and liquid-phase microextraction (LPME) techniques based on solid organic drop combined with gas chromatography-mass spectrometry detection (GC-MS). After pre-concentration and purification of the sample through column containing 60 mg of β-cyclodextrin-bonded silica particles as stationary phase, under the optimum conditions, LPME technique has been performed on the eluent solution. Under the selected conditions, limit of detection (LOD) of 0.002-0.04 μg/L (S/N=3), limit of quantification (LOQ) of 0.007-0.15 μg/L (S/N=10), pre-concentration factor of 752-3135 and linearity range of 0.01-25 μg/L have been obtained. A reasonable repeatability (RSD≤9.5%, n=5) with satisfactory coefficient of determination has been obtained between 0.9981 and 0.9997. The relative recoveries of the waste, sea, river and well water samples were higher than 79%.