Hydrophobic Shielding of Outer Surface: Enhancing the Chemical Stability of Metal–Organic Polyhedra

Metal–organic polyhedra (MOP) are a promising class of crystalline porous materials with multifarious potential applications. Although MOPs and metal–organic frameworks (MOFs) have similar potential in terms of their intrinsic porosities and physicochemical properties, the exploitation of carboxylate MOPs is still rudimentary because of the lack of systematic development addressing their chemical stability. Herein we describe the fabrication of chemically robust carboxylate MOPs via outer‐surface functionalization as an a priori methodology, to stabilize those MOPs system where metal–ligand bond is not so strong. Fine‐tuning of hydrophobic shielding is key to attaining chemical inertness with retention of the framework integrity over a wide range of pH values, in strong acidic conditions, and in oxidizing and reducing media. These results are further corroborated by molecular modelling studies. Owing to the unprecedented transition from instability to a chemically ultra‐stable regime using a rapid ambient‐temperature gram‐scale synthesis (within seconds), a prototype strategy towards chemically stable MOPs is reported.     

Superprotonic Conductivity of MOFs Confining Zwitterionic Sulfamic Acid as Proton Source and Conducting Medium

A few metal–organic frameworks (MOFs), which typically use strong acids as proton sources, display superprotonic conductivity (≈10⁻¹ S cm⁻¹); however, they are rare due to the instability of MOFs in highly acidic conditions. For the first time, we report superprotonic conductivity using a moderately acidic guest, zwitterionic sulfamic acid (HSA), which is encapsulated in MOF-808 and MIL-101. HSA acts not only as a proton source but also as a proton-conducting medium due to its extensive hydrogen bonding ability and zwitterion effect. A new sustained concentration gradient method results in higher HSA encapsulation compared to conventional methods, producing 10HSA@MOF-808-(bSA)₂ and 8HSA@MIL-101. These MOFs show impressive superprotonic conductivity of 2.47×10⁻¹ and 3.06×10⁻¹ S cm⁻¹, respectively, at 85 °C and 98 % relative humidity, and maintain stability for 7 days.     

Diverse polymorphism of G-quadruplexes as a kinetic phenomenon

Knowledge of forces that drive conformational transitions of G-quadruplexes is crucial for understanding the molecular basis of several key cellular processes. It can only be acquired by combining structural, thermodynamic and kinetic information. Existing biophysical and structural evidences on polymorphism of intermolecular G-quadruplexes have shown that the formation of a number of these structures is a kinetically controlled process. Reported kinetic models that have been used to describe the association of single strands into quadruplex structures seem to be inappropriate since the corresponding model-predicted activation energies turn out to be negative. By contrast, we propose here a novel kinetic model that successfully describes experimentally monitored folding/unfolding transitions of G-quadruplexes and gives positive activation energies for all elementary steps, including those describing association of two single strands into bimolecular quadruplex structures. It is based on a combined thermodynamic and kinetic investigation of polymorphic behavior of bimolecular G-quadruplexes formed from d(G4T4G4) and d(G4T4G3) strands in the presence of Na(+) ions, monitored by spectroscopic (UV, CD) and calorimetric (DSC) techniques. According to our experiment and model analysis the topology of the measured G-quadruplexes is clearly flexible with the conformational forms that respond to the rate of temperature change at which global unfolding/folding transitions occur.     

1,3‐Dipolar Cycloadditions to (5Z)‐1‐Acyl‐5‐(cyanomethylidene)‐ imidazolidine‐2,4‐diones: Synthesis and Transformations of Spirohydantoin Derivatives

Cycloadditions of various 1,3‐dipoles to (5Z)‐1‐acyl‐5‐(cyanomethylidene)‐3‐methylimidazolidine‐2,4‐diones 8 or 9 , prepared in 3 steps from hydantoin ( 1 ) (Schemes 1 and 2), were studied. In all cases, reactions proceeded regio‐ and stereoselectively. The type of product depended on the 1,3‐dipole and/or dipolarophile employed as well as on reaction conditions. Thus, with stable dipoles under neutral conditions, spirohydantoin derivatives 12 – 16 were obtained (Scheme 2), while under basic or acidic conditions, pyrazole‐ or isoxazole‐5‐carboxamides 18 and 23 – 26 and carboxylate 27 were formed via aromatization of the newly formed dihydroazole ring, followed by the simultaneous cleavage of the hydantoin ring (Schemes 3 – 5).     

Cu(II) coordination polymers incorporating 3-aminopyridine and flexible aliphatic dicarboxylate ligands: Synthesis,structure and magnetic properties

The synthesis, structural chemistry and magnetic properties of a series of new Cu(II) polymers with α,ω-dicarboxylic acids (sebacic (H₂seb), suberic (H₂sub), succinic (H₂suc) and adipic (H₂adip)) and 3-aminopyridine (3-apy) are described: [Cu(Hsub)₂(3-apy)₂·2CH₃OH]_n (1); [Cu(Hseb)₂(3-apy)₂·4CH₃OH]_n (2); [Cu(Hsuc)₂(3-apy)₂]_n (3); [Cu(adip)(3-apy)₂]_n·n(H₂adip) (4). All four compounds feature a bis-monodentate bridging mode of the coordinated dicarboxylate moiety. Compounds 1 and 2 exhibit linear chains, whereas compound 3 shows two-dimensional structure. The 3-apy ligand acts as terminal ligand in 1–3. Compound 4 contains a doubly deprotonated adipate (adip²⁻) that connects Cu centers into linear chains. Additionally, 3-apy acts as a bridge in 4, resulting in the formation of parallel two-dimensional layers distant enough to host neutral molecules of adipic acid. Magnetic susceptibility measurements of compounds 1 and 3 show Curie law behavior indicating that the S = 1/2 Cu(II) spin carriers are magnetically well isolated by the dicarboxylate ligands.     

The solution structures and dynamics and the solid-state structures of substituted cyclopentadienyltitanium(IV) trifluorides

Organotitanium fluorides (C5Me4R)TiF3 (R = H, Me, Et) sublimate with formation of crystalline dimers. From solution, we obtained crystals of dimers and tetramers. The tetramer [{(C5Me5)TiF3}4] irreversibly dissociates in the solid state to dimers (DeltaH = 8.33 kcal mol(-1)). The variable-temperature (1)H and (19)F NMR spectroscopy measurements of the toluene-d(8) solution of [{(C5Me5)TiF3}2] revealed at 202 K one monomeric, two dimeric (with C2h and Cs symmetry), two tetrameric (with D2 and C2v symmetry), and two trimeric (both C2 symmetry) molecules. With the increase in temperature and dilution of the solution, the composition of the solution shifts to the smaller molecules. The thermodynamic and activation parameters for the reversible dissociation of dimers to monomers in the solution are DeltaH = 9.2 kcal mol(-1), DeltaS = 24.2 cal mol(-1) K(-1), DeltaH(double dagger) = 12.2 kcal mol(-1), DeltaS(double dagger) = 9.7 cal mol(-1) K(-1). The dissociation path with a weakly double-bridged transition-state dimer was proposed. The thermodynamic parameters for the reversible dissociation of the C2v tetramer to the dimers in solution are DeltaH = 7.9 kcal mol(-1) and DeltaS = 26.8 cal mol(-1) K(-1). From both tetramers, the D2 molecule is 0.34(5) kcal mol(-1) lower in enthalpy and 6.5(5) cal mol(-1) K(-1) lower in entropy than the C2v molecule. The structures of both trimers were proposed. The low-temperature 19F NMR spectra of the CDCl3 solution of [{(C5Me5)TiF3}2] are consistent with equilibria of a monomer, two dimers (with C2h and Cs symmetry), and a trimer. The vapor pressure osmometric molecular mass determination of CDCl3 solution of [{(C5Me5)TiF3}2] at 302 K is consistent with the equilibrium of the dimer and the monomer.     

Energetic basis of human telomeric DNA folding into G-quadruplex structures

Recent theoretical studies performed on the folding/unfolding mechanism of the model telomeric human DNA, 5'-AGGGTTAGGGTTAGGGTTAGGG-3' (Tel22), have indicated that in the presence of K(+) ions Tel22 folds into two hybrid G-quadruplex structures characterized by one double and two reversal TTA loops arranged in a different way. They predicted a new unfolding pathway from the initial mixture of hybrid G-quadruplexes via the corresponding intermediate triplex structures into the final, fully unfolded state. Significantly, no experimental evidence supporting the suggested pathway has been reported. In the current work, we performed a comprehensive global thermodynamic analysis of calorimetric (DSC, ITC) and spectroscopic (CD) data obtained on monitoring the folding/unfolding of Tel22 induced by changes of temperature and K(+) concentration. We show that unfolding of Tel22 may be described as a monomolecular equilibrium three-state process that involves thermodynamically distinguishable folded (F), intermediate (I), and unfolded (U) state. Considering that calorimetric methods cannot distinguish between energetically similar G-quadruplex or triplex conformations predicted by the theoretical model one can conclude that our results represent the first experimental support of the suggested unfolding/folding mechanism of Tel22. This conclusion is confirmed by the fact that the estimated number of K(+) ions released upon each unfolding step in our thermodynamic model agrees well with the corresponding values predicted by the theoretical model and that the observed changes in enthalpy, entropy, and heat capacity accompanying the F → I and I → U transitions can be reasonably explained only if the intermediate state I is considered to be a triplex structural conformation.     

Three-dimensional helical coordination networks of a hexanuclear manganese metallamacrocycle as a helical tecton

We report on helical coordination networks that were prepared using a hexanuclear manganese metallamacrocycle as a helical tecton. We were able to prepare the three-dimensional helical coordination networks using a hexanuclear manganese metallamacrocycle, [Mn(6)(lshz)(6)], as a helical tecton, where N-lauroyl salicylhydrazide (H(3)lshz) was used as the primary building unit to generate the helical tecton as a secondary building unit. While the 4(1)/4(3) screw symmetry-linked helical coordination network was obtained when the primary building units had an N-acetyl group, both the 3(1)/3(2) screw symmetry-linked and the 4(1)/4(3) screw symmetry-linked helical coordination networks were obtained simultaneously in the same batch when the primary building unit had a long alkyl N-lauroyl group at the N-acetyl site.     

A dimeric cobalt(II)–suberate complex with 3‐amino­pyridine

The title complex, μ‐octane‐1,8‐dioato‐bis[bis(3‐aminopyridine)chloro(methanol)cobalt(II)], [Co₂(C₈H₁₂O₄)Cl₂(C₅H₆N₂)₄(CH₄O)₂], is located on a crystallographic centre of inversion. The coordination around each of the Co centres is distorted octa­hedral, involving two N, three O and one Cl atom. Discrete dimers are connected in a three‐dimensional arrangement through N—H⋯O, N—H⋯Cl and O—H⋯O hydrogen‐bond inter­actions.     

Expert system for solving problems in carbon-13 nuclear magnetic resonance spectroscopy

The expert system CARBON is built around a knowledge base consisting of spectra/structure correlations, tables of data, mathematical formulae and graph-theory procedures and on a data base of 2500 assigned ¹³C-NMR spectra. The built-in knowledge enables the user to obtain suggestions for solutions to problems of different types arising in ¹³C-NMR spectroscopy. Use of the system is facilitated by appropriate command files, large on-line help files, and user-friendly dialogue. The system can be used with spectrometries other than ¹³C-NMR and in other fields concerned with correlations between chemical structures and properties.