Direct identification of all oncogenic mutants in KRAS exon 1 by cycling temperature capillary electrophoresis

Over the past few decades, advances in genetics and molecular biology have revolutionized our understanding of cancer initiation and progression. Molecular progression models outlining genetic events have been developed for many solid tumors, including colon cancer. Previous reports in the literature have shown a relationship between different KRAS mutations and prognosis and response to medical treatment in colon cancer patients. Furthermore, the presence of a mutated KRAS has been correlated with different clinicopathological variables including age and gender of patients and tumor location. To our knowledge, few institutions screen for KRAS mutations on regular basis in colon cancer patients despite such evidence that knowledge of KRAS exon 1 status is informative. Here, we report on a mutation analysis method adapted to a 96-capillary electrophoresis instrument that allows identification of all 12 oncogenic mutations in KRAS exon 1 under denaturing conditions. To determine the optimal parameters, a series of DNA constructs generated by site-directed mutagenesis was analyzed and the migration times of all mutant peaks were measured. A classification tree was then made based on the differences in migration time between the mutants and an internal standard. A randomized series of 500 samples constructed with mutagenesis as well as 60 blind samples from sporadic colon carcinomas was analyzed to test the method. No wild-type samples were scored as mutants and all mutants were correctly identified. Post polymerase chain reaction (PCR) analysis time of 96 samples was performed within 40 min.     

Experimental evidence for multiple oxidation pathways in the (salen) Mn-catalyzed epoxidation of alkenes

The substrate electronic effects on the selectivity in the catalytic epoxidation of para-substituted cis stilbenes 2a-i were investigated by using (R,R)-[N,N'-bis(3,5-di-tBu-salicylidene)-1,2-cyclohexanediamine]manganese(III) chloride 1 in benzene as the catalyst with iodosobenzene as the terminal oxidant. A Hammett study of the selectivity results reveals a stronger electrophilic character than previously assumed in the (salen)Mn-catalyzed reaction. In general, the best correlations with the experimental values were obtained by using the Hammett sigma + values, which gave rho = -1.37 for the rate of cis-epoxide formation and rho = -0.43 for the rate of the stepwise process leading to the corresponding trans product. The reaction involves two separate pathways as indicated also by the competitive breakdown of the intermediate on the path to trans epoxide for methoxy-substituted substrates. The asynchronicity in the concerted pathway leading to cis epoxide is apparent for 4-methoxy-4'-nitrostilbene, which yields cis epoxide with 75% ee entirely as a result of electronic effects.     

Photobleaching of radiation induced trapped electrons in neutral and alkaline glasses. Hydrogen atom formation

Photomobilization of trapped electrons in 7 M NaClO₄- and 9 M NaOH-glass gives rise to trapped hydrogen atoms. This is probably due to the reaction e^?_m + H₂O → H + OH^?. Experiments with an electron scavenger indicate that electrons are not precursors to radiolytically produced hydrogen atoms. It seems that the mobile electrons produced during photobleaching are not slowed down to thermal energy before they react to produce hydrogen atoms, since the yield of the latter species is strongly dependent on the wavelength of the bleaching light.     

Cascades of energy among the vibrational levels of diatomic molecules trapped in a rare gas matrix: With application to 12C16O(ν) in Ar

Energy stored in vibrational level ν = 1 of several individual dipolar diatomic molecules AB which are trapped in a rare gas matrix M is automatically accumulated in a higher level ν > 1 of a single molecule AB. This remarkable cascade of energy upwards competes with a cascade of energy downwards. the radiative decay. The interplay of both cascades, first observed by Dubost and Charneau, is explained a simple model. The model incorporates three processes into a master equation for the relative populations P_ν(t) of levels ν: (a) migration of single quanta by resonance energy transfer, AB(1) + AB(0) ? AB(0) + AB(1); (b) phonon assisted excitation of upper levels, AB(1) + AB(ν) → AB(0) + AB(ν+1); and (c) radiative decay, AB(ν) → AB(ν-1). The model assumes that there is only one isotopic species AB which has a small but nonzero vibrational anharmonicity, that the temperature is low, T → 0 K, the concentration ratio ?_M/?_AB is large and that, initially, at time t = 0, a small fraction p₁ of molecules AB is excited to level ν = 1. The master equation has only two parameters, the radiative lifetime t_rad and k  2/[?_AB?₁k(1,1 → 0,2)t_rad], where k(1,1 → 0,2) is the reference rate constant of process (b). The master equation is solved in closed form for the Pν(t). For t_rad = 14 ms and k = 0.2, very satisfactory qualitative agreement is found for the theoretical P_ν(t) and the experimental time evolution of the relative population of vibrational levels of ¹²C¹⁶O in an argon matrix, for ?_M/?_AB = 2000 at T = 9 K. In agreement with experimental results it is concluded that the risetime of the fluorescence signals decreases whereas population inversion increases for decreasing values of ?_M/?AB. At long times, t > t_rad, any population inversion should disappear.     

Kekulé structure counts for some classes of all-benzenoid and all-coronoid hydrocarbons

Summary A general formula for the Kekulé structure count (K) is deduced for the class of catacondensed all-benzenoids with unbranched backbones. The formula is extended to thin pericondensed all-benzenoids, where allowance is made for pyrene units. In this treatment the fragmentation matrices are employed. A generalization of these matrices is furnished. Next some generalK formulas for classes of catacondensed and thin pericondensed all-coronoids are deduced. Again the fragmentation matrices are employed, but the problem is also studied in terms of certain polynomials.Dedicated to the memory of Professor Oskar E. Polansky, who died in January 1989. He was the one who coined the term all-benzenoid.     

Exploiting C3-symmetry in the dynamic coordination of a chiral trisoxazoline to copper(II): improved enantioselectivity, and catalyst stability in asymmetric lewis acid catalysis

Chiral C3-symmetric trisoxazolines are highly efficient stereodirecting ligands in enantioselective Cu(II) Lewis acid catalysis which is based on the concept of a stereoelectronic hemilability of the divalent copper; in direct comparison with the analogous bisoxazoline systems they are more efficient in the enantioselective alpha-amination as well as the enantioselective Mannich reaction of prochiral beta-ketoesters.     

Deviation from Ohm's law in electric field assisted capillary liquid chromatography

Earlier studies of electric field assisted LC (EF-LC) have shown that the effect on charged analytes of the application of an electric field over a capillary LC column is relatively small. Charged analytes can only be affected by the electric field while present in the mobile phase, which makes the effective time for influence of the electric field t(0) independent of retention time. Because the charged analytes only can be affected for a short time the electric field strength ought to be high in order to increase the impact of the electric field on the separation. We have, however, found that only a relatively low electric field strength can be used in EF-LC when pressure is used as main driving force. The useful field strength was limited by a dramatic increase in the current. This increase in current was found to origin from an increased concentration of buffer ions that have an electrophoretic mobility towards the pumped flow.     

Synthesis of 2•,3•-Dideoxy-3•-<Emphasis Type="Italic">C</Emphasis>-hydroxymethylcytidine Phosphonomethyl Derivatives

Phosphonomethyl substituted 2?,3?-Dideoxy-3?-C-hydroxymethylcytidines have been synthesized and evaluated for their anti HIV-1 activities. The sugar moiety was synthesized starting from (S)-5-hydroxymethylfuran-2-(5H)-one using photocatalyzed addition of methanol. Reduction of the lactone, condensation with silylated 4-methoxy-2(1H)pyrimidinone, followed by phosphonomethylation and deprotection gave the title compounds. The compounds were tested for inhibition of HIV-1 activity but did not show any significant antiviral activity.     

A π-acceptor series for phosphines from51V N.M.R. data on [η5-CpV(CO)3L] complexes

Summary Qualitative molecular orbital considerations of the complexes [⁵-CPV(CO)₃ L] (L = substituted phosphane, SbPh₃, AsPh₃, CN^–) suggest that s' V chemical shift parameters () obtained for these compounds should correlate with the -acceptor abilities of L. Based on observed r-values, the ligands are arranged in sequence of their -acceptor ability, which lies in the order P(OR)₃ > CN^– > PR'₃3 SbPh₃ PPhF₂ > P(i-Bu)₃ P(NR ₂ )₃ > PPh₃ > AsPh₃ Nuclear spin-spin coupling constants J (⁵¹V-³¹ P), line widths H and i.r. data in the (CO) region are also presented.P(OR)₃ = P(OEt)₃, 4-Ethyl-l-phospha-2,6,7-trioxabicyclo[2.2.2]-octane; R = Me, n-Pr; R = Me, Et.     

Determination of compositions and isomer structures in mixtures of cis- and trans-1,2-dichloroethene (ClHC=CHCl) by gas-phase electron diffraction

Using gas-phase electron diffraction it has been demonstrated that a composition of known isomer mixtures can be determined with error limits of about 5%, all relevant structural parameters being refined simultaneously by the least-squares method. If, however, corresponding bond distances and valence angles have erroneously been assigned equal values in the two isomers, a large increase in the least-squares error limits from 5% to 12% is noticed. Apparently innocent assumptions about some of the parameters can lead to incorrect isomer composition and to too small error limits as estimated by the least-squares formulae.

From the reinvestigation of pure cis-1,2-dichloroethene the following bond distances (r_a) and valence angles () were determined: r(C---H) = 1.090(29) Å, r(C=C) = 1.345(6) Å, r(C---Cl) = 1.716(4) Å, C=C---Cl = 123.8(2)°, C=C---H = 119.4(26)°. Error limits are 2σ.