Profiling and comprehensive expression analysis of ABC transporter solute-binding proteins of Bacillus subtilis membrane based on a proteomic approach

We analyzed ABC transporter solute-binding proteins (SBPs) of the Bacillus subtilis membrane using a proteomic approach. We prepared a washed cell membrane fraction that was insoluble in 134 mM nondetergent sulfobetaine and then extracted proteins using mixtures of detergents in a stepwise manner. The membrane proteins were resolved by three two-dimensional polyacrylamide gel electrophoresis (2-D PAGE) or two one-dimensional (1-D) PAGE procedures, electroblotted, and digested in the presence of 5% or 80% acetonitrile. Thereafter, matrix-assisted laser desorption/ionization-time of flight-mass spectrometry (MALDI-TOF MS) identified 637 proteins corresponding to 15.9% of the total cellular proteins. We predicted that among these, 256 were membrane proteins, 101 were lipoproteins or secretory proteins and 280 were soluble proteins containing peripheral proteins that function in both the cytoplasm and the cell membrane such as SecA and FtsY. Among the 637 proteins, we identified 30 SBPs among 38 importers predicted by a bioinformatic search of the genome. We confirmed expression of the genes for the 30 SBPs using DNA microarray analysis. We compared the 2-D gel separation profiles of submembrane fractions solubilized by 1% n-dodecyl-beta-D-maltoside from cells cultured on Luria Bertani (LB), S7, and S7 medium without glutamate as well as DNA microarray data on LB and S7. The results suggested that YcdH, YtmK and YurO are binding proteins for Mn(++), glutamate and glucose, respectively, and that YqiX and YxeM are binding proteins for amino acids (tryptophan in S7 medium).     

Novel and efficient method for esterification, amidation between carboxylic acids and equimolar amounts of alcohols, and amines utilizing Me2NSO2Cl and N,N-dimethylamines; its application to the synthesis of coumaperine, a natural chemopreventive dieneamide

Various carboxylic esters or amides were prepared in good to excellent yield between carboxylic acids and equimolar amounts of alcohols or amines under very mild conditions (0-45°C; within 3 h) using dimethylsulfamoyl chloride (Me₂NSO₂Cl; 1) combined with N,N-dimethylamines (Me₂NR: 2a; R=Me, 2b; R=Bu). The choice of the sulfamoyl chloride and the amine is crucial for the reaction; that is, sterically uncrowded amines accelerated the present esterification and amidation. This agent had some advantages over methanesulfonyl chloride (3)/amines as for the atom-economy, avoidance of side reactions, and had very high chemoselectivity toward the carboxyl group vs the hydroxyl group; the experiment was performed by the addition of 1 to the mixture of carboxylic acids and alcohols. Application of this method to the synthesis of coumaperine, a chemopreventive natural product, was performed using the present amidation as a key step.     

Effect of preswelling of polymers in radiation-induced graft copolymerization

The graft copolymerization of styrene onto preirradiated poly(isobutylene oxide) was studied. An alkyl radical, ? C(CH₃)₂? CH? O? , was mainly observed by the irradiation of preswelled poly(isobutylene oxide) in aerated methanol. Kinetic analysis of the graft copolymerization indicated that the preswelling influenced k_tr and k_t and did not influence of ∫ R_idt and k_p.     

Uneven distribution of ventilation—perfusion ratios in lungs estimated by a modified Newton method

The uneven distribution of ventilation—perfusion ratios ( ) in diseased lungs is the major cause of arterial hypoxemia. Farhi and Yokoyama (1967) and Yokoyama and Farhi (1967) were the first who used physiologically inert gases as indicator gases to assess the uneven distribution of Wagner and his coworkers in San Diego (1977b) extended the method and elaborated the multiple inert gas elimination technique in which blood flows in 50 compartments with different were estimated based on data for 6 indicator gases. They analyzed the indicator gas data through an enforced smoothing technique with the ridge regression. To get smooth distributions, they introduced a weighting function for compartments and an additional treatment for the non-negativity of the blood flow. The weighting function was empirically obtained. We analyzed the data without putting any weights on compartments nor any additional treatment for non-negativity of blood flow. The analytical method in the present study was a modified Newton method, which is one of the enforced smoothing method. Our method was capable of recovering all distribution patterns that were found through the method reported by Wagner et al. (1977b).     

Point to string transformation,or framedependent notion of “locality”: An attempt to finitize field theories including gravitation

A novel approach has been made to the divergence problem in local field theories, in which the notion of locality is still retained but loses its absolute meaning, just like simultaneity. The basic idea is to introduce a pure-imaginary elementary length into 3-dimensional space, while keeping time structureless so as to retain the unitarity of theS-matrix. Consequently, light becomes dispersive at sufficiently short wavelengths, and Lorentz transformation becomes a point-to-string transformation. When reformulated to meet the new Lorentz invariance, all the localfield (in the above sense) theories in a flat space become finite,while retaining their conventional form. This has been demonstrated by the derivation of finitized Coulomb potential and correct high-momentum behavior of quantum-electrodynamic coupling constant. For diagrams including gravitons, evaluation of the superficial degrees of divergence shows that only a restricted number of 1-(and 2-) loop diagrams might be divergent, while those of more than 3 loops are definitely convergent, thus indicating possible renormalizability (or something better) of quantum gravity in Einstein's formalism of general relativity. Since 4-dimensional simple supergravity removes 1-and 2-loop divergence, a combination of the theory and the present one might lead to a more interesting result.     

Bloch-Messiah theorem at finite temperature

The Bloch-Messiah theorem is extended to the thermal Hartree-Fock-Bogoliubov (THFB) theory by making use of the thermo field dynamics. This enables us to define the correct order parameter describing the superconducting phase at finite temperature, and demonstrates consistency of the THFB formalism.Dedicated to Prof. Dr. H.J. Mang on the occasion of his 60th birthday     

Lipid-soluble and water-soluble arsenic compounds in blubber of ringed seal (Pusa hispida)

High concentrations of arsenic were observed in the blubber of ringed seals (Pusa hispida) in our previous study. To better understand the arsenic accumulation in blubber of marine mammals, arsenicals in the blubber of ringed seal were characterized using high performance liquid chromatography–inductively coupled plasma mass spectrometry (HPLC–ICPMS). The most predominant water-soluble arsenical in the blubber was dimethylarsinic acid (DMA), in spite of the predominance of arsenobetaine in other tissues. Lipid-soluble fraction was hydrolyzed under mild (tetraethylammonium hydroxide (TEAH) hydrolysis) and strong (NaOH hydrolysis) conditions, and then an aliquot of hydrolysate was injected onto HPLC–ICPMS. Both TEAH-labile and TEAH-stable/NaOH-labile lipid-soluble fractions contained precursors of DMA. These results suggest that the blubber might be the pool of DMA and DMA-containing precursors in ringed seals.     

Preparation of dibenzofuran-type amorphous polyetherketone by novel etherification reaction

4-Fluorobenzophenone reacted with potassium carbonate in the presence of silica catalyst in diphenyl sulfone solvent to yield 4,4′-dibenzoyldiphenyl ether. This new etherification reaction was extended to three difluoro aromatic ketones. 4,4′-Bis(4-fluorobenzoyl)diphenyl ether ( I ) reacted with potassium carbonate to yield a crystalline poly(oxy-1,4-phenylene-carbonyl-1,4-phenylene) (PEK) and 4,4′-bis{4-[4-(4-fluorobenzoyl)phenoxy]benzoyl}benzene ( II ) gave a crystalline poly(oxy-1,4-phenylene-carbonyl-1,4-phenylene-oxy-1,4-phenylene-carbonyl-1,4-phenylene-oxy-1,4-phenylene-carbonyl-1,4-phenylene-carbonyl-1,4-phenylene)(PEKEKEKK). 2,8-Bis(4-fluorobenzoyl)dibenzofuran ( III ) or 2,8-bis(4-chlorobenzoyl)dibenzofuran ( IV ) reacted with potassium carbonate to yield a poly(oxy-1,4-phenylene-carbonyl-2,8-dibenzofuran-carbonyl-1,4-phenylene) (PEKBK). The PEKBK was a noval amorphous polymer with the glass transition temperature of 222°C and it showed excellent thermal stability [T. Tanabe and I. Fukawa, Jpn. Pat., Kokai 64–74223 (1989)]. Several amorphous dibenzofuran type polyetherketone copolymers were prepared by coplycondensation of III with 4,4′-difluorobenzophenone ( V ) or 1,4-bis(4-fluorobenzoyl)benzene ( VI ) [T. Tanabe and I. Fukawa, Jpn. Pat., Kokai 1153722 (1989)]. © 1992 John Wiley & Sons, Inc.     

Chirality exchange from sp3 central chirality to axial chirality: benzannulation of optically active diaryl-2,2-dichlorocyclopropylmethanols to axially chiral alpha-arylnaphthalenes

Chirality exchange benzannulation of optically active (1S)-aryl(aryl')-2,2-dichlorocyclopropylmethanols (>99% ee) using TiCl4 successfully proceeded to give axially chiral (M)-alpha-arylnaphthalenes with excellent levels of stereo induction (>99% ee). This unique transformation involves the single-step chirality exchange from sp3 central chirality to axial chirality, that is, a type of excellent memory effect.     

Crystal structure of a methyl(methoxy)carbene complex of nickel(II), trans-[Ni(C6Cl5)(PMe2Ph)2{C(OMe)Me}]BF4

The structure of a nickel(II) complex, trans-[Ni(C₆Cl₅)(PMe₂Ph)₂{C(OMe)Me}]BF₄, containing the simplest alkyl(alkoxy)carbene ligand has been determined by X-ray crystallography (R = 0.091). The geometry around the nickel atom is square-planar. The comparatively short NiC(1) bond length of 1.843(10) Å showed the presence of π-bonding in the nickel-carbene bond.