Profiling and comprehensive expression analysis of ABC transporter solute-binding proteins of Bacillus subtilis membrane based on a proteomic approach

We analyzed ABC transporter solute-binding proteins (SBPs) of the Bacillus subtilis membrane using a proteomic approach. We prepared a washed cell membrane fraction that was insoluble in 134 mM nondetergent sulfobetaine and then extracted proteins using mixtures of detergents in a stepwise manner. The membrane proteins were resolved by three two-dimensional polyacrylamide gel electrophoresis (2-D PAGE) or two one-dimensional (1-D) PAGE procedures, electroblotted, and digested in the presence of 5% or 80% acetonitrile. Thereafter, matrix-assisted laser desorption/ionization-time of flight-mass spectrometry (MALDI-TOF MS) identified 637 proteins corresponding to 15.9% of the total cellular proteins. We predicted that among these, 256 were membrane proteins, 101 were lipoproteins or secretory proteins and 280 were soluble proteins containing peripheral proteins that function in both the cytoplasm and the cell membrane such as SecA and FtsY. Among the 637 proteins, we identified 30 SBPs among 38 importers predicted by a bioinformatic search of the genome. We confirmed expression of the genes for the 30 SBPs using DNA microarray analysis. We compared the 2-D gel separation profiles of submembrane fractions solubilized by 1% n-dodecyl-beta-D-maltoside from cells cultured on Luria Bertani (LB), S7, and S7 medium without glutamate as well as DNA microarray data on LB and S7. The results suggested that YcdH, YtmK and YurO are binding proteins for Mn(++), glutamate and glucose, respectively, and that YqiX and YxeM are binding proteins for amino acids (tryptophan in S7 medium).     

Effect of preswelling of polymers in radiation-induced graft copolymerization

The graft copolymerization of styrene onto preirradiated poly(isobutylene oxide) was studied. An alkyl radical, ? C(CH₃)₂? CH? O? , was mainly observed by the irradiation of preswelled poly(isobutylene oxide) in aerated methanol. Kinetic analysis of the graft copolymerization indicated that the preswelling influenced k_tr and k_t and did not influence of ∫ R_idt and k_p.     

Purification of Food Color Red No. 106 (acid red) using pH-zone-refining counter-current chromatography

pH-Zone-refining counter-current chromatography was successfully applied to the separation of the main components of Food Color Red No. 106 (R-106, acid red, Color Index No. 45100). A 300-mg quantity of sample was separated using the following two-phase solvent system: n-butanol-water, 40 mM sulfuric acid in organic stationary phase and 30 mM ammonia in aqueous mobile phase. The obtained fractions were analyzed by high-performance liquid chromatography and fast atom bombardment mass spectrometry. The separation yielded 261.9 mg of main component of acid red with purity of 99.9%.     

Uneven distribution of ventilation—perfusion ratios in lungs estimated by a modified Newton method

The uneven distribution of ventilation—perfusion ratios ( ) in diseased lungs is the major cause of arterial hypoxemia. Farhi and Yokoyama (1967) and Yokoyama and Farhi (1967) were the first who used physiologically inert gases as indicator gases to assess the uneven distribution of Wagner and his coworkers in San Diego (1977b) extended the method and elaborated the multiple inert gas elimination technique in which blood flows in 50 compartments with different were estimated based on data for 6 indicator gases. They analyzed the indicator gas data through an enforced smoothing technique with the ridge regression. To get smooth distributions, they introduced a weighting function for compartments and an additional treatment for the non-negativity of the blood flow. The weighting function was empirically obtained. We analyzed the data without putting any weights on compartments nor any additional treatment for non-negativity of blood flow. The analytical method in the present study was a modified Newton method, which is one of the enforced smoothing method. Our method was capable of recovering all distribution patterns that were found through the method reported by Wagner et al. (1977b).     

Point to string transformation,or framedependent notion of “locality”: An attempt to finitize field theories including gravitation

A novel approach has been made to the divergence problem in local field theories, in which the notion of locality is still retained but loses its absolute meaning, just like simultaneity. The basic idea is to introduce a pure-imaginary elementary length into 3-dimensional space, while keeping time structureless so as to retain the unitarity of theS-matrix. Consequently, light becomes dispersive at sufficiently short wavelengths, and Lorentz transformation becomes a point-to-string transformation. When reformulated to meet the new Lorentz invariance, all the localfield (in the above sense) theories in a flat space become finite,while retaining their conventional form. This has been demonstrated by the derivation of finitized Coulomb potential and correct high-momentum behavior of quantum-electrodynamic coupling constant. For diagrams including gravitons, evaluation of the superficial degrees of divergence shows that only a restricted number of 1-(and 2-) loop diagrams might be divergent, while those of more than 3 loops are definitely convergent, thus indicating possible renormalizability (or something better) of quantum gravity in Einstein's formalism of general relativity. Since 4-dimensional simple supergravity removes 1-and 2-loop divergence, a combination of the theory and the present one might lead to a more interesting result.     

Crystal structure of a methyl(methoxy)carbene complex of nickel(II), trans-[Ni(C6Cl5)(PMe2Ph)2{C(OMe)Me}]BF4

The structure of a nickel(II) complex, trans-[Ni(C₆Cl₅)(PMe₂Ph)₂{C(OMe)Me}]BF₄, containing the simplest alkyl(alkoxy)carbene ligand has been determined by X-ray crystallography (R = 0.091). The geometry around the nickel atom is square-planar. The comparatively short NiC(1) bond length of 1.843(10) Å showed the presence of π-bonding in the nickel-carbene bond.     

Morphological change of gold-dendrimer nanocomposites by laser irradiation

Gold-dendrimer nanocomposites are prepared in aqueous solutions in the presence of poly(amidoamine)dendrimers (PAMAM) (generation 3 and 5) or poly(propyleneimine)dendrimers (PPI) (generation 3 and 4) by wet chemical NaBH(4) method. Thus prepared gold-dendrimer nanocomposites are irradiated by laser at 532 nm. UV-vis absorption spectroscopy and transmission electron microscopy reveal that the gold nanoparticles grow with the laser irradiation time as well as the fluence of the laser; in particular, the gold nanoparticles prepared at lower concentrations of PAMAM dendrimer as well as lower generations of PAMAM grow significantly. On the other hand, in the case of PPI dendrimers, the gold nanoparticles hardly grow by irradiation. In addition, dynamic light-scattering measurements show that the laser irradiation markedly promotes the association of the gold-PAMAM G3 dendrimer nanocomposites compared to that of the gold-PAMAM G5 dendrimer nanocomposites, while the sizes of association for the gold-PPI G3, G4 dendrimer nanocomposites hardly change by laser irradiation.     

Effect of pH on adsolubilization of single and binary organic solutes into a cationic hydrocarbon surfactant adsorbed layer on silica

The adsolubilization behaviors of 2-naphthol, biphenyl, and their binary solutes in the hexadecyltrimethyl ammonium bromide (HTAB) adsorbed layer formed on silica have been studied with solution pH. Two feed concentrations of HTAB are employed: 1.5 and 3.0 mmol dm(-3). At the feed concentration of 1.5 mmol dm(-3) HTAB, most of HTAB are adsorbed on the silica as a monolayer, while a bilayer formation occurs at the feed concentration of 3.0 mmol dm(-3). It is found that the adsolubilized amounts of respective single solutes increase with increasing solution pH except acidic region for biphenyl under a constant feed concentration of 2-naphthol (0.4 mmol dm(-3)) and biphenyl (0.047 mmol dm(-3)). The adsolubilization of binary solutes depends on the feed concentration of HTAB; at the low HTAB feed concentration, competitive adsolubilization between 2-naphthol and biphenyl occurs above pH 4.5, while at the high HTAB feed concentration the adsolubilization of biphenyl is enhanced by the incorporation of 2-naphthol over a whole pH region. These behaviors in the adsolubilization are discussed from the surfactant structure of HTAB adsorbed as well as the admicellar partitioning coefficients.     

Theoretical analysis of correlation between ionization threshold fluence in IR‐MALDI and IR absorption spectrum of matrix molecules

To investigate the correlation between the wavelength dependence of ionization threshold fluence of target molecule in matrix‐assisted laser desorption/ionization by infrared (IR) laser and the IR absorption spectrum of matrix molecule, we have analyzed the IR absorption spectra of four matrix molecules using density functional theory and correlated ab initio molecular orbital method. The calculated IR absorption spectra of the isolated molecules showed more qualitative correlation with the wavelength dependence of ionization threshold fluence than those of the solid state structures. We can consider that a portion of matrix molecules lost the ordered crystal structure and that the transition to the diluted or isolated state occurred at the early process of IR laser irradiation. © 2012 Wiley Periodicals, Inc.