Conformational Dynamics in the Core of Human Y145Stop Prion Protein Amyloid Probed by Relaxation Dispersion NMR

Microsecond to millisecond timescale backbone dynamics of the amyloid core residues in Y145Stop human prion protein (PrP) fibrils were investigated by using ¹⁵N rotating frame (R_1ρ) relaxation dispersion solid-state nuclear magnetic resonance spectroscopy over a wide range of spin-lock fields. Numerical simulations enabled the experimental relaxation dispersion profiles for most of the fibril core residues to be modelled by using a two-state exchange process with a common exchange rate of 1000 s⁻¹, corresponding to protein backbone motion on the timescale of 1 ms, and an excited-state population of 2 %. We also found that the relaxation dispersion profiles for several amino acids positioned near the edges of the most structured regions of the amyloid core were better modelled by assuming somewhat higher excited-state populations (∼5–15 %) and faster exchange rate constants, corresponding to protein backbone motions on the timescale of ∼100–300 μs. The slow backbone dynamics of the core residues were evaluated in the context of the structural model of human Y145Stop PrP amyloid.     

Preprocessed barley,rye, and triticale as a feedstock for an integrated fuel ethanol-feedlot plant

Rye, triticale, and barley were evaluated as starch feedstock to replace wheat for ethanol production. Preprocessing of grain by abrasion on a Satake mill reduced fiber and increased starch concentrations in feedstock for fermentations. Higher concentrations of starch in flours from preprocessed cereal grains would increase plant throughput by 8–23% since more starch is processed in the same weight of feedstock. Increased concentrations of starch for fermentation resulted in higher concentrations of ethanol in beer. Energy requirements to produce one L of ethanol from preprocessed grains were reduced, the natural gas by 3.5–11.4%, whereas power consumption was reduced by 5.2–15.6%.     

Crystal structure and thermoanalytical study of a manganese(II) complex with 1-allylimidazole

The crystal structure of a manganese(II) 1-allylimidazole complex ([Mn(1-AIm)₃(NO₃)₂], where 1-Aim=1-allylimidazole), was characterized by X-ray diffraction (XRD) using SHELX-97. The thermal behaviour of the complex was investigated by thermogravimetry (TG) coupled with an FTIR unit. The complex showed a multi-step decomposition related to the release of the ligand molecules, followed by oxidation. The final residue at 1073 K was found to be manganese(II) oxide. Evolved gas analysis allowed to prove the oxidative decomposition pattern of the examined complex, initially proposed by the percentage mass loss data. Finally, a kinetic analysis of the oxidative decomposition steps was made using the Kissinger equation, while the complex nature of the decomposition kinetics was revealed by the isoconversional Ozawa-Flynn-Wall method.     

Pd electrodeposited from membrane-separated thin layer cell

Polycarbonate (PC) membranes of different porosity (from 50 nm to 400 nm pore size) were used as separators in a thin layer cell for palladium electrodeposition. Atomic force microscopy (AFM) confirmed the formation of Pd layer between the cathode and porous membrane, with subsequent growth inside the pores induced by space limitations of further growth of initial layer. Our estimates confirm that at this stage Pd deposit feels the pronounced mechanical pressure and consider it as a possible reason of specific hydrogen sorption behaviour in the region of β-phase hydride formation. Up to c.a. 1.0 H/Pd atomic ratio is observed for some samples. We consider possible (nano)structural peculiarities responsible for this behaviour.     

Fluorescence amplification by electrochemically deposited silver nanowires with fractal architecture

Electrochemically deposited silver structures with nanowires 50-100 nm in diameter show high fluorescence amplification and strongly reduced fluorescence lifetimes. Both quantities depend on the structure thickness. With increasing thickness the fluorescence amplification proportionally increases and the fluorescence lifetime decreases. This thickness dependence is caused by fluorophore interaction with a system of plasmon excitations in coupled nanowires extending over micrometer size regions. Thus the amplification is attributed to a combination of extended structure area and strong plasmonic coupling between nanowires which also help to radiatively scatter the fluorescence emission.     

New ceramic-carbon composites for electrodes for electrochemical capacitors

A new class of composite materials is introduced. Fine powders of silica, titania, Y-modified zirconia, and three types of alumina were pressed and sintered to form porous monoliths with relatively uniform pore structure. Carbon was then deposited in the pores of such monoliths by thermal decomposition of dichloromethane, cyclohexene, and glucose. The structure of the carbon deposit was studied by low-temperature nitrogen adsorption and by thermal analysis. The composite materials were used as electrodes in electrochemical capacitors with 1-ethyl-3-methylimidazolium trifluoromethylsulfonate (a low-temperature ionic liquid) as the electrolyte. High capacitances were observed for glucose-derived materials, which had high specific surface areas.     

Surface activity of commercial food grade modified starches

An attempt to quantitative evaluation of the functionality of food grade chemically modified starches in the emulsion systems by estimation of their surface activity as well as the capability of thickening food products was the main purpose of this present work. It was stated that chemically modified starches reveal higher surface activity at air/water and toluene/water interfaces in comparison to the native starch. The increase of the degree of substitution of polar carboxyl groups as well as rather non-polar acetyl ones results in an enhance of surface activity. Starch sodium octenylsuccinate stands out from other investigated starches, in its excellent capability of lowering surface and interfacial tension. Cross-linked starches reveal excellent stabilisation activity at a pH range of 5.5–7.0 but their surface activity is lower than those of other modified starches. Acetylated starch as well as starch sodium octenylsuccinate reveal satisfactory thickening capability up to pH 4.5 and moreover their surface activity (especially of E 1450) allows us to recommend them as functional constituents of food emulsions. Low thickening capability of oxidised starches rather excluded these derivatives from the group of potential functional additives for food emulsions.     

Calculation and analysis of low frequency normal modes for DNA

Normal mode calculations for two alternating sequence dodecamers in A, B, and Z conformations have been performed in dihedral angle space extended to endocyclic valence angles to account for sugar ring flexibility. Normal modes are analyzed in terms of helicoidal and backbone parameter variations with special attention being paid to global deformations of the double helix such as bending, twisting, or stretching. Results show that the allomorphic form of DNA has the largest influence on the flexibility of the sugar-phosphate backbone. Amplitudes of these vibrations follow the order: B > Z > A. In contrast, the amplitudes of helicoidal parameter variations are much more dependent on the base sequence. Global deformations of the double helix occur with characteristic times in the range of 1 to 10 ps and can be of mixed character, the strongest bending mode being at the same the time strongest stretching mode. © 1997 by John Wiley & Sons, Inc. J Comput Chem 18: 796–811, 1997     

Composition,Anti-MRSA Activity and Toxicity of Essential Oils from Cymbopogon Species

Many of the essential oils obtained from medicinal plants possess proven antimicrobial activity and are suitable for medicinal purposes and applications in the food industry. The aim of the present work was the chemical analysis of 19 essential oils (EOs) from seven different Cymbopogon species (C. nardus, C. citratus, C winterianus, C. flexuosus, C. schoenanthus, C. martinii, C. giganteus). Five different chemotypes were established by GC/MS and TLC assay. The EOs, as well as some reference compounds, i.e., citronellol, geraniol and citral (neral + geranial), were also tested for their antimicrobial and antibiofilm activity against methicillin-resistant Staphylococcus aureus (MRSA) by the microdilution method and direct bioautography. The toxicity of EOs was evaluated by Danio rerio ‘Zebrafish’ model assay. All examined EOs showed moderate to high activity against MRSA, with the highest activity noted for C. flexuosus—lemongrass essential oil, both in microdilution and direct autobiography method. Significant difference in the toxicity of the examined EOs was also detected.