Medium-high resolution electrochemical genotyping of HLA-DQ2/DQ8 for detection of predisposition to coeliac disease

Coeliac disease is a small intestinal disorder, induced by ingestion of gluten in genetically predisposed individuals. Coeliac disease has been strongly linked to human leukocyte antigens (HLA) located on chromosome 6, with almost 100 % of coeliac disease sufferers carrying either a HLA-DQ2 or HLA-DQ8 heterodimer, with the majority carrying HLA-DQ2 encoded by the DQA1*05:01/05:05, DQB1*02:01/02:02 alleles, whereas the remaining carry the HLA-DQ8 encoded by the DQA1*03:01, DQB1*03:02 alleles. In this work, we present the development of a multiplex electrochemical genosensor array of 36 electrodes, housed within a dedicated microfluidic platform and using a total of 10 sequence-specific probes for rapid medium-high resolution HLA-DQ2/DQ8 genotyping. An evaluation of the selectivity of the designed probes was carried out with the target sequences and 44 potentially interfering alleles, including single base mismatch differentiations; good selectivity was demonstrated. The performance of the electrochemical genosensor array was validated, analyzing real human samples for the presence of HLA-DQ2/DQ8 alleles, and compared with those obtained using laboratory-based HLA typing, and an excellent correlation was obtained.

Ferromagnetic ordering in bisthiaselenazolyl radicals: variations on a tetragonal theme

A series of five isostructural bisthiaselenazolyl radicals 2 have been prepared and characterized by X-ray crystallography. The crystal structures, all belonging to the tetragonal space group P42(1)m, consist of slipped pi-stack arrays of undimerized radicals packed about 4 centers running along the z-direction, an arrangement which gives rise to a complex lattice-wide network of close intermolecular Se---Se' contacts. Variations in R1 (Et, Pr, CH2CF3) with R2 = Cl lead to significant changes in the degree of slippage of the pi-stacks and hence the proximity of the Se---Se' interactions. By contrast, variations in R2 (Cl, Br, Me) with R1 = Et induce very little change in either the degree of slippage or the intermolecular contacts. Variable-temperature conductivity (sigma) measurements show relatively constant values for the conductivity sigma(300 K) (10(-5)-10(-4) S cm(-1)) and thermal activation energy E(act) (0.27-0.31 eV). Variable-temperature magnetic susceptibility measurements indicate that radicals 2b and 2c (R1 = Pr, CH2CF3; R2 = Cl) behave as weakly antiferromagnetically coupled Curie-Weiss paramagnets, but in 2a, 2d and 2e (R1 = Et; R2 = Cl, Me, Br) ferromagnetic ordering is observed, with T(c) values of 12.8 (R2 = Cl), 13.6 (R2 = Me), and 14.1 K (R2 = Br). The origin of the dramatically different magnetic behavior across the series has been explored in terms of a direct through-space mechanism by means of DFT calculations on individual pairwise exchange energies. These indicate that antiferromagnetic exchange between radicals along the pi-stacks increases with pi-stack slippage.     

The dynamics of water at DNA interfaces: computational studies of Hoechst 33258 bound to DNA

Together, spectroscopy combined with computational studies that relate directly to the experimental measurements have the potential to provide unprecedented insight into the dynamics of important biological processes. Recent time-resolved fluorescence experiments have shown that the time scales for collective reorganization at the interface of proteins and DNA with water are more than an order of magnitude slower than in bulk aqueous solution. The molecular interpretation of this change in the collective response is somewhat controversial some attribute the slower reorganization to dramatically retarded water motion, while others describe rapid water dynamics combined with a slower biomolecular response. To connect directly to solvation dynamics experiments of the fluorescent probe Hoechst 33258 (H33258) bound to DNA, we have generated 770 ns of molecular dynamics (MD) simulations and calculated the equilibrium and nonequilibrium solvation response to excitation of the probe. The calculated time scales for the solvation response of H33258 free in solution (0.17 and 1.4 ps) and bound to DNA (1.5 and 20 ps) are highly consistent with experiment (0.2 and 1.2 ps, 1.4 and 19 ps, respectively). Decomposition of the calculated response revealed that water solvating the probe bound to DNA was still relatively mobile, only slowing by a factor of 2-3, while DNA motion was responsible for the long-time component (approximately 20 ps).     

The influence of electrolyte on photocatalytic activity of PEO coatings with incorporated Ce-ZSM5 formed on aluminum

Journal of Solid State Electrochemistry - The preparation and characterization of oxide coatings made by plasma electrolytic oxidation (PEO) process on aluminum in two different electrolyte...     

Influence of fluid flow on the deposition of soluble surfactants through receding contact lines of volatile solvents

Soluble surfactants are often deposited from volatile solvents through moving contact lines. In this study, we demonstrate that altering the flow field near such a contact line fundamentally changes the deposited surfactant structure. At slow contact line speeds, the substrate emerges dry. A densely packed, tilted monolayer of surfactant is deposited along the solid-vapor interface from the rolling fluid motion at the contact line. At faster speeds, the substrate emerges with an evaporating thin film entrained on its surface. Surfactant is confined in the film in a constantly increasing concentration environment. Monodisperse crystalline islands nucleate and grow on the surface with sizes and shapes controlled by varying the deposition conditions. These results contrast with disordered deposits that result from evaporation at a pinned contact line. Our results suggest that dip-coating with control of dipping speed and evaporation rate may provide better control of deposition through contact lines of evaporating solvents.     

Trialkylammoniododecaborates: anions for ionic liquids with potassium, lithium and protons as cations

Herein we report a new class of low-melting ionic liquids (IL) that consist of N,N,N-trialkylammonioundecahydrododecaborates(1-) as the anion and a range of cations. The cations include the common cations of conventional ILs such as tetraalkylammonium, N-alkylpyridinium, and N-methyl-N'-alkylimidazolium. In addition, their salts with lithium, potassium, and proton cations also exist as ILs. Pulse radiolysis studies indicate that the anions do not react with solvated electrons.     

P NMR study of the valence stability of tin in its 1-hydroxyethylene-diphosphonate (HEDP) and N,N′,N′-trimethylenephosphonate-polyethyleneimine (PEI-MP) complexes

The valence stability of tin in its complexes with 1-hydroxyethylene-diphosphonate (HEDP) and with N,N′,N′-trimethylenephosphonate-polyethyleneimine (PEI-MP) was investigated. With particular interest in the possible interconversion between Sn²⁺ and Sn⁴⁺, the complexes were monitored with the aid of ³¹P NMR spectroscopy. The extent of complex formation with both ligands was evaluated for systems with tin in their respective oxidation states. The Sn²⁺-complexes underwent initial, but limited oxidation upon preparation, and beyond which were rather stable, irrespective of pH or time. Both Sn²⁺- and Sn⁴⁺-complexes were found to exist in solution without change. Oxidation of Sn²⁺ was achieved by addition of hydrogen-peroxide and was partially reversed by the addition of glutathione (GSH). The amount of H₂O₂ needed for complete oxidation of the Sn²⁺- into Sn⁴⁺-complexes was determined for both ligands, as well as the time taken for that oxidation.     

Vibrational-torsional excitation and direct overtone photodissociation of ethyl hydroperoxide at 5nuOH

We have observed OH radical products from the unimolecular dissociation of ethyl hydroperoxide (CH3-CH2OOH) excited to 5nuOH and have collected an action spectrum from 15,600 to 16,800 cm(-1) and an OH product state distribution at the maximum (16,119 cm(-1)). We use a vibrational-torsional model to simulate spectra in the 5nuOH region for the trans and gauche conformers. A combination of the two simulated spectra resembles the experimental action spectrum, provided that the trans conformer is assumed to dominate at room temperature. Energy disposal in the OH fragment yields an upper limit for the O-O bond dissociation energy at D0 < 44 kcal mol(-1).     

Synchronization of the minimal models of bursting neurons coupled by delayed chemical or electrical synapses

The minimal two-dimensional model of bursting neuronal dynamics is used to study the influence of time-delay on the properties of synchronization of bursting neurons. Generic properties of bursting and dependence of the stability of synchronization on the time-lag and the strength of coupling are described, and compared with the two common types of synaptical coupling, i.e., time-delayed chemical and electrical synapses.     

Microwave-assisted seeded growth of lanthanide-based nanoparticles for imaging and therapy

Size control: Particles designed for imaging and therapy need to be size tunable to ensure their optimal performance. A highly reproducible procedure for the preparation of uniform, spherical, lanthanide-based nanoparticles (NPs) was developed. The size of the particles can be predefined to an accuracy of up to a few nanometers by microwave-generated temperature control and the choice of aging time (see figure).