Isoelectric point determination by imaged CIEF of commercially available SARS-CoV-2 proteins and the hACE2 receptor

In order to contribute to the scientific research on the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), we have investigated the isoelectric points (pI) of several related proteins, which are commercially available: the receptor-binding domain (RBD) with His- and Fc-tag, the S1 subunit with His-tag, the S1/S2 subunits with His-tag and the human angiotensin-converting enzyme 2 (hACE2) with His-tag. First, the theoretical pI values, based on the amino acid (AA) sequences of the proteins, were calculated using the ProtParam tool from the Bioinformatics Resource Portal ExPASy. The proteins were then measured with the Maurice imaged CIEF system (native fluorescence detection), testing various measurement conditions, such as different ampholytes or ampholyte mixtures. Due to isoforms, we get sections with several peaks and not just one peak for each protein. The determined pI range for the RBD/Fc is 8.24–9.32 (theoretical pI: 8.55), for the RBD/His it is 7.36–9.88 (8.91) and for the S1/His it is 7.30–8.37 (7.80). The pI range of the S1/S2/His is 4.41–5.87 (no theoretical pI, AA sequence unknown) and for hACE2/His, the determined global range is 5.19–6.11 (5.60) for all experimental conditions chosen. All theoretically derived values were found within these ranges, usually close to the center. Therefore, we consider theoretical values as useful to make predictions about the isoelectric points of SARS-CoV-2 proteins. The experimental conditions had only a minor influence on the pI ranges obtained and mainly influenced the peak shapes.     

The Application of HEXS and HERFD XANES for Accurate Structural Characterisation of Actinide Nanomaterials: The Case of ThO2

The structural characterisation of actinide nanoparticles (NPs) is of primary importance and hard to achieve, especially for non-homogeneous samples with NPs less than 3 nm. By combining high-energy X-ray scattering (HEXS) and high-energy-resolution fluorescence-detected X-ray absorption near-edge structure (HERFD XANES) analysis, we have characterised for the first time both the short- and medium-range order of ThO₂ NPs obtained by chemical precipitation. By using this methodology, a novel insight into the structures of NPs at different stages of their formation has been achieved. The pair distribution function revealed a high concentration of ThO₂ small units similar to thorium hexamer clusters mixed with 1 nm ThO₂ NPs in the initial steps of formation. Drying the precipitates at around 150 °C promoted the recrystallisation of the smallest units into more thermodynamically stable ThO₂ NPs. HERFD XANES analysis at the thorium M₄ edge, a direct probe for f states, showed variations that we have correlated with the breakdown of the local symmetry around the thorium atoms, which most likely concerns surface atoms. Together, HEXS and HERFD XANES are a powerful methodology for investigating actinide NPs and their formation mechanism.     

Electron detachment dissociation of neutral and sialylated oligosaccharides

Electron detachment dissociation (EDD) has recently been shown by Amster and coworkers to constitute a valuable analytical approach for structural characterization of glycosaminoglycans. Here, we extend the application of EDD to neutral and sialylated oligosaccharides. Both branched and linear structures are examined, to determine whether branching has an effect on EDD fragmentation behavior. EDD spectra are compared to collisional activated dissociation (CAD) and infrared multiphoton dissociation (IRMPD) spectra of the doubly and singly deprotonated species. Our results demonstrate that EDD of both neutral and sialylated oligosaccharides provides structural information that is complementary to that obtained from both CAD and IRMPD. In all cases, EDD resulted in additional cross-ring cleavages. In most cases, cross-ring fragmentation obtained by EDD is more extensive than that obtained from IRMPD or CAD. Our results also indicate that branching does not affect EDD fragmentation, contrary to what has been observed for electron capture dissociation (ECD).     

Spin-canting in heavy atom heterocyclic radicals

A pair of isostructural bis-selenathiazolyl and bis-diselenazolyl radical conductors display weak (spin-canted) ferromagnetism with Tc values of 18 K and 27 K respectively.     

Stability, bifurcations, and dynamics of global variables of a system of bursting neurons

An approximate mean field model of an ensemble of delayed coupled stochastic Hindmarsh-Rose bursting neurons is constructed and analyzed. Bifurcation analysis of the approximate system is performed using numerical continuation. It is demonstrated that the stability domains in the parameter space of the large exact systems are correctly estimated using the much simpler approximate model.     

Identification of acyl protein thioesterases 1 and 2 as the cellular targets of the ras-signaling modulators palmostatin b and m

Finding the target: Activity-based proteomic profiling probes based on the depalmitoylation inhibitors palmostatin?B and M have been synthesized and were found to target acyl protein thioesterase?1 (APT1) and 2 (APT2) in cells.     

Nanopore generation in hybrid polycyanurate/poly(ε-caprolactone) thermostable networks

Novel nanoporous thermosetting films were obtained from thermostable polycyanurate (PCN)-based hybrid networks synthesized by polycyclotrimerization of cyanate ester of bisphenol E in the presence of a modifier reactive toward cyanate groups, i.e. dihydroxy-telechelic poly(ε-caprolactone) (PCL). The nanoporous structure was generated in PCN/PCL hybrid networks after extraction of unreacted free PCL sub-chains which were not chemically incorporated into the PCN cross-linked framework. Structure–property relationships for precursory and porous PCN/PCL hybrid networks were investigated using a large array of physico-chemical techniques. The porosity associated with the networks after extraction was more particularly evaluated by SEM and DSC-based thermoporometry: pore sizes around 10–90 nm were determined along with pore volumes as high as about 0.3 cm³ g⁻¹. Density and dielectric measurements strongly suggested the occurrence of closed pore structures. Due to their high thermal stability as investigated by TGA, nanoporous PCN/PCL hybrid cross-linked films could be considered as promising materials for potential applications as thermostable membranes.     

Yb valence states in YbC2: a HERFD-XANES spectroscopic investigation

The valence state of Yb in YbC(2) was analyzed using high-energy-resolution fluorescence detection (HERFD) X-ray absorption near-edge structure (XANES) spectroscopy and time-of-flight neutron powder diffraction to clarify a controversy in the literature. The unit cell volume of YbC(2) suggests a mixed Yb valence, which was formerly determined to be 2.8 by magnetization measurements and paramagnetic neutron scattering techniques. However, the nature of the intermediate valence was not clearly established. Both homogeneous and heterogeneous mixed valences were assumed in different publications. The temperature-dependent behavior of the valence state was only predicted, albeit not explicitly studied. In this work, the valence state of Yb in YbC(2) is, therefore, investigated thoroughly by HERFD-XANES spectroscopy at low and high temperatures. Our measurements result in an average Yb valence of 2.81 that is temperature-independent from 15 to 1123 K. These findings are confirmed by neutron powder diffraction experiments, which reveal a constant C-C distance of 128.7(9) pm in a temperature range from 5 to 100 K. A significant temperature dependence of the Yb valence state in YbC(2) can, therefore, be excluded by our experimental results.     

A family of chiral metal-organic frameworks

Chiral metal–organic frameworks with a three‐dimensional network structure and wide‐open pores (>30 Å) were obtained by using chiral trifunctional linkers and multinuclear zinc clusters. The linkers, H₃ChirBTB‐n, consist of a 4,4′,4′′‐benzene‐1,3,5‐triyltribenzoate (BTB) backbone decorated with chiral oxazolidinone substituents. The size and polarity of these substituents determines the network topology formed under solvothermal synthesis conditions. The resulting chiral MOFs adsorb even large molecules from solution. Moreover, they are highly active Lewis acid catalysts in the Mukaiyama aldol reaction. Due to their chiral functionalization, they show significant levels of enantioselectivity, thereby proving the validity of the modular design concept employed.