Tetra- versus Pentavalent Inhibitors of Cholera Toxin

The five B-subunits (CTB₅) of the Vibrio cholerae (cholera) toxin can bind to the intestinal cell surface so the entire AB₅ toxin can enter the cell. Simultaneous binding can occur on more than one of the monosialotetrahexosylganglioside (GM1) units present on the cell surface. Such simultaneous binding arising from the toxins multivalency is believed to enhance its affinity. Thus, blocking the initial attachment of the toxin to the cell surface using inhibitors with GM1 subunits has the potential to stop the disease. Previously we showed that tetravalent GM1 molecules were sub-nanomolar inhibitors of CTB₅. In this study, we synthesized a pentavalent version and compared the binding and potency of penta- and tetravalent cholera toxin inhibitors, based on the same scaffold, for the first time. The pentavalent geometry did not yield major benefits over the tetravalent species, but it was still a strong inhibitor, and no major steric clashes occurred when binding the toxin. Thus, systems which can adopt more geometries, such as those described here, can be equally potent, and this may possibly be due to their ability to form higher-order structures or simply due to more statistical options for binding.     

Water clustering and percolation in low hydration DNA shells

The hydrogen-bonded networks of water at the surface of a model DNA molecule are analyzed. At low hydrations, only small water clusters are attached to the DNA surface, whereas, at high hydrations, it is homogeneously covered by a spanning water network. The spanning water network is formed via a percolation transition at an intermediate hydration number of about 15 water molecules per nucleotide, which is very close to the midpoint of polymorphic transitions between A- and B-forms of the double helix. The percolation transition can occur in both A- and B-DNA hydration shells with nearly identical percolation thresholds. However, the mechanism of the percolation transition in A- and B-DNA is qualitatively different in regard to the roles played by the two opposite grooves of the double helix. Free ions can shift the percolation threshold by preventing some water molecules from hydrogen bond networking. The results corroborate the suggested relationship between water percolation and the low hydration polymorphism in DNA.     

Local photoconductivity of microcrystalline silicon thin films excited by 442 nm HeCd laser measured by conductive atomic force microscopy

Microcrystalline silicon (μc-Si:H) thin films were studied by photo-conductive atomic force microscopy (PC-AFM) under top side illumination by HeCd 442 nm laser and/or by scattered light of AFM detection diode. In order to make the top side illumination possible, so called “nose” type cantilevers, with the tip at the end of cantilever, were used for local photo-current map measurements. Local current intensity under different illumination is discussed mainly from a point of view of the absorption depth of the used light. Diffusion length of charge carriers ~ 300 nm was estimated from comparison of the current levels under different illumination.     

Tetraalkylcuprates(III): formation, association, and intrinsic reactivity

Tetraalkylcuprates are prototypical examples of organocopper(III) species, which remained elusive until their recent detection by NMR spectroscopy. In agreement with the NMR studies, the present electrospray ionization mass spectrometric experiments, as well as supporting electrical conductivity measurements, indicate that LiCuMe(2)·LiCN reacts with a series of alkyl halides RX. The resulting Li(+)Me(2)CuR(CN)(-) intermediates then afford the observable Me(3)CuR(-) tetraalkylcuprate anions upon Me/CN exchanges with added MeLi. In contrast, the reactions of LiCuMe(2)·LiCN with neopentyl iodide and various aryl halides give rise to halogen-copper exchanges. Concentration- and solvent-dependent studies suggest that lithium tetraalkylcuprates are not fully dissociated in ethereal solvents, but partly form Li(+)Me(3)CuR(-) contact ion pairs and presumably also triple ions LiMe(6)Cu(2)R(2)(-). According to theoretical calculations, these triple ions consist of two square-planar Me(3)CuR(-) subunits binding to a central Li(+) ion. Upon fragmentation in the gas phase, the mass-selected Me(3)CuR(-) anions undergo reductive elimination, yielding both the cross-coupling products MeR and the homocoupling product Me(2). The branching between these two fragmentation channels markedly depends on the nature of the alkyl substituent R. The triple ions LiMe(6)Cu(2)R(2)(-) (as well as their mixed analogues LiMe(6)Cu(2)R(R')(-)) also afford both cross-coupling and homocoupling products upon fragmentation, but strongly favor the former. On the basis of theoretical calculations, we rationalize this prevalence of cross-coupling by the preferential interaction of the central Li(+) ion of the triple ions with two Me groups of each Me(3)CuR(-) subunit, which thereby effectively blocks the homocoupling channel. Our results thus show how a Li(+) counterion can alter the reactivity of an organocopper species at the molecular level.     

Analysis of light-induced conformational changes of Natronomonas pharaonis sensory rhodopsin II by time resolved electron paramagnetic resonance spectroscopy

The nature and kinetics of the conformational changes leading to the activated state of NpSRII/NpHtrII157 were investigated by time-resolved electron paramagnetic resonance (TR-EPR) spectroscopy in combination with site-directed spin labeling (SDSL) on a series of spin labeled mutants of NpSRII. A structural rearrangement of the cytoplasmic moiety of NpSRII upon light activation was detected (helices B, C, F and G). The increase in distance between helices C and F in the M-trapped state of the complex observed in one double mutant is in line with the notion that an outward movement of helix F occurs upon receptor activation. The data obtained from the NpSRII/NpHtrII157 complex reconstituted in purple membrane lipids are compared with those obtained from the X-ray structure of the late M-state of the complex which shows some discrepancies. The results are discussed in the context also of other biophysical and EPR experimental evidences.     

Ionic Aggregates of Lithium Organocuprates

We have used a combination of electrospray ionization mass spectrometry and electrical conductivity measurements to analyze solutions of the Gilman cuprates LiCuR₂?LiX, with R=Ph, Bu and X=Cl, Br, I, in tetrahydrofuran and have compared our findings with previous results on cyanocuprates LiCuR₂?LiCN. Among the various polynuclear organocuprate ions observed, Li₂Cu₃Ph₆^?, LiCu₄Ph₆^?, and Cu₅Ph₆^? are of particular interest because aggregates of the same composition are known from X‐ray crystal structures. Control experiments have indicated that the polynuclear organocuprate anions detected in solution are indeed identical to those formed in the solid state. As abundant ions of the type Li₂Cu₃R₆^? are found in solutions of Gilman cuprates and cyanocuprates alike, their possible involvement in organocuprate reactions should be considered. For comparison, we have also included solutions of LiCu(R)I, LiCuX₂?LiX, LiCuX₂, and CuCN?2 LiX in the present study.     

One-phase synthesis of gold nanoparticles with varied solubility

We developed a straightforward synthesis of gold nanoparticles with diameters in the range 2.1-7.0 nm which display solubility in both aqueous and nonpolar (toluene, chloroform) media. This versatile solubility of the nanoparticles is achieved by the use of a thiolated PEG capping agent. Their plasmon resonance band is virtually unaltered in different media.