Synthesis of 3,4-dihydropyridin-2-one derivatives in convergent mode applying bio catalyst vitamin B1 and polymer supported catalyst PEG-SO3H from two different sets of building blocks

Two highly efficient, green protocols have been developed for the synthesis of 3,4-dihydropyridin-2-one derivatives from different starting materials exploring two reaction specific catalysts, vitamin B₁ (VB₁), and PEG-SO₃H. VB₁ catalyzed simple and convenient protocol has been developed for the synthesis of 3,4-dihydropyridin-2-one derivatives by the installation of aldehyde, cyanoacetamide, and 1,3-dicarbonyl compounds. In addition, 3,4-dihydropyridin-2-one derivatives have also been synthesized by simply combining aldehyde, malononitrile, and 1,3-dicarbonyl compounds via the formation of 4H-pyran nucleus and PEG-SO₃H catalyzed one-pot rearrangement.     

Layer-by-layer-assembled microfiltration membranes for biomolecule immobilization and enzymatic catalysis

Multilayer assemblies of polyelectrolytes, for protein immobilization, have been created within the membrane pore domain. This approach was taken for two reasons: (1) the high internal membrane area can potentially increase the amount of immobilized protein, and (2) the use of convective flow allows uniform assembly of layers and eliminates diffusional limitations after immobilization. To build a stable assembly, the first polyelectrolyte layer was covalently attached to the membrane surface and inside the pore walls. Either poly(L-glutamic acid) (PLGA) or poly(L-lysine) (PLL) was used in this step. Subsequent deposition occurs by multiple electrostatic interactions between the adsorbing polyelectrolyte [poly(allylamine) hydrochloride (PAH) or poly(styrenesulfonate) (PSS)] and the oppositely charged layer. Three-layer membranes were created: PLL-PSS-PAH or PLGA-PAH-PSS, for an overall positive or negative charge, respectively. The overall charge on both the protein and membrane plays a substantial role in immobilization. When the protein and the membrane are oppositely charged, the amount immobilized and the stability within the polyelectrolyte assembly are significantly higher than for the case when both have similar charges. After protein incorporation in the multilayer assembly, the active site accessibility was comparable to that obtained in the homogeneous phase. This was tested by affinity interaction (avidin-biotin) and by carrying out two reactions (catalyzed by glucose oxidase and alkaline phosphatase). Besides simplicity and versatility, the ease of enzyme regeneration constitutes an additional benefit of this approach.     

Ultrafast electron transfer in a nanocavity. dimethylaniline to coumarin dyes in hydroxypropyl gamma-cyclodextrin

Photoinduced electron transfer (PET) from N,N-dimethylaniline (DMA) to four coumarin dyes (C151, C481, C153, and C480) inside the cavity of hydroxypropyl gamma-cyclodextrin (hpCD) is studied using femtosecond upconversion. The rate of PET is found to be nonexponential and to vary significantly with the coumarin dyes. The rate for C481 is 100 times faster than that for C480. The PET rate displays a bell-shaped dependence on the free energy change and thus reveals a Marcus-type inverted region. The anisotropy decay of the four dyes in hpCD are found to be very similar, and hence the observed variation in the rate of PET is not due to variation in rotational diffusion of the acceptors (coumarin dyes).     

Ultrafast fluorescence resonance energy transfer in a micelle

Ultrafast fluorescence resonance energy transfer (FRET) from coumarin 153 (C153) to rhodamine 6G (R6G) is studied in a neutral PEO(20)-PPO(70)-PEO(20) triblock copolymer (P123) micelle and an anionic micelle (sodium dodecyl sulfate, SDS) using a femtosecond up-conversion setup. Time constants of FRET were determined from the rise time of the acceptor emission. It is shown that a micelle increases efficiency of FRET by holding the donor and the acceptor at a close distance (intramicellar FRET) and also by tuning the donor and acceptor energies. It is demonstrated that in the P123 micelle, intramicellar FRET (i.e., donor and acceptor in same micelle) occurs in 1.2 and 24 ps. In SDS micelle, there are two ultrafast components (0.7 and 13 ps) corresponding to intramicellar FRET. The role of diffusion is found to be minor in the ultrafast components of FRET. We also detected a much longer component (1000 ps) for intramicellar FRET in the larger P123 micelle.     

Conformational specificity of non-canonical base pairs and higher order structures in nucleic acids: crystal structure database analysis

Non-canonical base pairs contribute immensely to the structural and functional variability of RNA, which calls for a detailed characterization of their spatial conformation. Intra-base pair parameters, namely propeller, buckle, open-angle, stagger, shear and stretch describe structure of base pairs indicating planarity and proximity of association between the two bases. In order to study the conformational specificities of non-canonical base pairs occurring in RNA crystal structures, we have upgraded NUPARM software to calculate these intra-base pair parameters using a new base pairing edge specific axis system. Analysis of base pairs and base triples with the new edge specific axis system indicate the presence of specific structural signatures for different classes of non-canonical pairs and triples. Differentiating features could be identified for pairs in cis or trans orientation, as well as those involving sugar edges or C-H-mediated hydrogen bonds. It was seen that propeller for all types of base pairs in cis orientation are generally negative, while those for trans base pairs do not have any preference. Formation of a base triple is seen to reduce propeller of the associated base pair along with reduction of overall flexibility of the pairs. We noticed that base pairs involving sugar edge are generally more non-planar, with large propeller or buckle values, presumably to avoid steric clash between the bulky sugar moieties. These specific conformational signatures often provide an insight into their role in the structural and functional context of RNA.     

Temperature dependence of solvation dynamics and anisotropy decay in a protein: ANS in bovine serum albumin

Temperature dependence of solvation dynamics and fluorescence anisotropy decay of 8-anilino-1-naphthalenesulfonate (ANS) bound to a protein, bovine serum albumin (BSA), are studied. Solvation dynamics of ANS bound to BSA displays a component (300 ps) which is independent of temperature in the range of 278-318 K and a long component which decreases from 5800 ps at 278 K to 3600 ps at 318 K. The temperature independent part is ascribed to a dynamic exchange of bound to free water with a low barrier. The temperature variation of the long component of solvation dynamics corresponds to an activation energy of 2.1 kcal mol(-1). The activation energy is ascribed to local segmental motion of the protein along with the associated water molecules and polar residues. The time scale of solvation dynamics is found to be very different from the time scale of anisotropy decay. The anisotropy decays are analyzed in terms of the wobbling motion of the probe (ANS) and the overall tumbling of the protein.     

Rhodium(I) carbonyl complexes of mono selenium functionalized bis(diphenylphosphino)methane and bis(diphenylphosphino)amine chelating ligands and their catalytic carbonylation activity

The chelate complexes of the types (1) and (2) have been synthesized and characterized by IR and NMR spectroscopy. The lower shift of the ν(P-Se) bands and downfield shift of the ³¹P-{¹H}NMR signals for both P(III) and P(V) atoms in 1 and 2 compared to the corresponding free ligands indicate chelate formation through selenium donor. 1 and 2 show terminal ν(CO) bands at 1977 and 1981 cm⁻¹, respectively, suggesting high electron density at the metal center. The molecular structure of 2 has been determined by single-crystal X-ray diffraction. The rhodium atom is at the center of a square planar geometry having the phosphorus and selenium atoms of the chelating ligand at cis-position, one carbonyl group trans- to selenium and one chlorine atom trans- to phosphorus atom. 1 and 2 undergo oxidative addition (OA) reaction with CH₃I to produce acyl complexes (3) and (4), respectively. The kinetics of the OA reactions reveal that 1 undergoes faster reaction by about 4.5 times than 2. The catalytic activity of 1 and 2 in carbonylation of methanol was higher than that of the well known species [Rh(CO)₂I₂]⁻ and 2 shows higher catalytic activity compared to 1.     

Small amplitude, free longitudinal vibrations of a load on a finitely deformed stress-softening spring with limiting extensibility

A constitutive theory for a general class of incompressible, isotropic stress-softening, limited elastic rubberlike materials is introduced. The model is applied to study the small amplitude, free longitudinal vibrational frequency of a load about a suspended static equilibrium stretch of a finitely deformed, stress-softening spring with limiting extensibility. A number of physical results, including bounds on the frequency, are reported. It is proved, for example, that the normalized vibrational frequency for the ideally elastic neo-Hookean oscillator is a lower bound for the normalized frequency of every incompressible, isotropic stress-softening, limited elastic oscillator within the general class. All results are illustrated for the special limited elastic Gent and the purely elastic Demiray biomaterial models, both with stress-softening characterized by a Zú?iga–Beatty front factor damage function. The results for both stress-softening models are compared with experimental data for several gum rubbers and thoracic aortic tissue provided by others; and, overall, it is found that the stress-softening, limited elastic Gent model best characterizes the data.     

Jet-cooled laser-induced fluorescence spectroscopy of B2Σ+–X2Σ+ system of scandium monoxide: Improved molecular constants at equilibrium

The investigation on B²Σ⁺–X²Σ⁺ system of ScO was extended to higher vibrational levels by laser-induced fluorescence (LIF) spectroscopy in a free-jet. We have observed rotationally resolved excitation spectra for (4,0), (3,0), (2,0), and (1,2) bands in addition to the previously observed (0,0) and (1,0) bands. The wavenumbers of these bands were fitted to a Hamiltonian matrix to determine the molecular constants for the vibrational levels up to ν′=4 of the B²Σ⁺ state and ν″=2 of the X²Σ⁺ state. In addition, the vibration constants of the ground states were determined from the dispersed fluorescence wavenumbers between B²Σ⁺ (ν′=0–4) and X²Σ⁺ (ν″=0–8) transitions. The equilibrium molecular constants, derived from the extensive set of molecular constants for individual vibrational levels, were used to construct RKR potential energy curves for both the electronic states. The Franck–Condon factors were also calculated for the B²Σ⁺–X²Σ⁺ transition.     

Iron oxide nanoparticle synthesis in aqueous and membrane systems for oxidative degradation of trichloroethylene from water

The potential for using hydroxyl radical (OH^?) reactions catalyzed by iron oxide nanoparticles (NPs) to remediate toxic organic compounds was investigated. Iron oxide NPs were synthesized by controlled oxidation of iron NPs prior to their use for contaminant oxidation (by H₂O₂ addition) at near-neutral pH values. Cross-linked polyacrylic acid (PAA) functionalized polyvinylidene fluoride (PVDF) microfiltration membranes were prepared by in situ polymerization of acrylic acid inside the membrane pores. Iron and iron oxide NPs (80–100 nm) were directly synthesized in the polymer matrix of PAA/PVDF membranes, which prevented the agglomeration of particles and controlled the particle size. The conversion of iron to iron oxide in aqueous solution with air oxidation was studied based on X-ray diffraction, Mössbauer spectroscopy and BET surface area test methods. Trichloroethylene (TCE) was selected as the model contaminant because of its environmental importance. Degradations of TCE and H₂O₂ by NP surface generated OH^? were investigated. Depending on the ratio of iron and H₂O₂, TCE conversions as high as 100 % (with about 91 % dechlorination) were obtained. TCE dechlorination was also achieved in real groundwater samples with the reactive membranes.