Basicity of some P1 phosphazenes in water and in aqueous surfactant solution

The pKa values in water and in dilute surfactant solution for 15 ring-substituted phenyl P1 pyrrolidino phosphazenes PhN=P(NC4H8)3 and the phenyl P1 dimethylamino phosphazene PhN=P(NMe2)3 previously studied in acetonitrile (AN) and tetrahydrofuran (THF) are reported. The nonionic surfactant Tween 20 was used for the basicity measurements of some compounds to overcome the solubility problems. Measurements with a control group of phosphazenes in both media were used to validate the use of the obtained pKa values as estimates of aqueous values. The pK(a) values of the studied phosphazenes in aqueous medium vary from 6.82 (2,6-dinitro-) to 12.00 (4-dimethylamino-). The basicity span is 5.18 pKa units. The aqueous pKa values of the P1 phosphazenes were correlated with the respective basicity data in AN and THF and from these correlations the pK(a) values in water for the parent compounds HN=P(NC4H8)3 and HN=P(NMe2)3 were estimated as 13.9 and 13.3. Also a comparison of the basicity of phosphazenes and some guanidines, amines and pyridines was made. In water the parent phosphazenes and guanidines are the strongest of all the groups of bases studied. In AN and THF the parent phosphazenes are clearly the strongest bases followed by guanidines, amines and pyridines which are bracketed between the basicities of phenyl phosphazenes. In the gas phase the phosphazenes for which data are available are clearly more basic than the other compounds referred to here. Comparison of the basicity data of P1 phosphazenes and some guanidines confirms earlier conclusions about the partly ylidic character of the N=P double bond.     

Recombinant phytochrome of the moss Ceratodon purpureus (CP2): fluorescence spectroscopy and photochemistry

The recombinant phytochrome of the moss Ceratodon purpureus (CP2) expressed in Saccharomyces cerevisiae and reconstituted with phycocyanobilin (PCB) was investigated using fluorescence spectroscopy. The pigment had an emission maximum at 670 nm at low temperature (85 K) and at 667 nm at room temperature (RT) and an excitation maximum at 650-652 nm at 85 K (excitation spectra could not be measured at RT). Both spectra had a half-band width of approx. 30-35 nm at 85 K. The fluorescence intensity revealed a steep temperature dependence with an activation energy of fluorescence decay (Ea) of 5.9-6.4 and 12.6-14.7 kJ mol(-1) in the interval from 85 to 210 K and from 210 to 275 K, respectively. The photochemical properties of CP2/PCB were characterised by the extent of the red-induced (lambda(a) = 639 nm) Pr conversion into the first photoproduct lumi-R at 85 K (gamma1) of approximately 0.07 and into Pfr at RT (gamma2) of approximately 0.7. From these characteristics, CP2/PCB can be attributed to the Pr" photochemical type with gamma1 < or = 0.05, which comprises the minor phyA fraction (phyA"), phyB, Adiantum phy1 and Synechocystis Cph1 in contrast to the major phyA' fraction (Pr' type with gamma1 = 0.5). Within the Pr" type, it is closer to phyA" than to phyB and Cph1.     

Brønsted basicities of diamines in the gas phase, acetonitrile, and tetrahydrofuran

A comprehensive basicity study of alpha,omega-alkanediamines and related bases has been carried out. Basicities in acetonitrile (AN, pK(a) values), tetrahydrofuran (THF, pK(alpha) values), and gas phase (GP, GB values), were measured for 16, 14, and 9 diamine bases and for several related monoamines. In addition the gas-phase basicities and equilibrium geometries were computed for 19 diamino bases and several related monoamines at the DFT B3LYP 6-311+G** level. The effects of the different factors (intrinsic basicity of the amino groups, formation of intramolecular hydrogen bonds, and molecular strain) determining the diamine basicities were estimated by using the method of isodesmic reactions. The results are discussed in terms of molecular structure and solvation effects. The GP basicity is determined by the molecular size and polarizability, the extent of alkylation, and the energy effect of intramolecular hydrogen bond formation in the protonated base. The basicity trends in the solvents differ very much from those in GP: 1) The solvents severely compress the basicity range of the bases studied (3.5 times for the 1,3-propanediamine family in AN, and 7 times in THF), and 2) while stepwise alkylation of the basicity center leads to a steady basicity increase in the gas phase, the picture is complex in the solvents. Significant differences are also evident between THF and AN. The high hydrogen bond acceptor strength of THF leads to this solvent favoring the bases with "naked" protonation centers. In particular, the basicity order of N-methylated 1,3-propanediamines is practically inverse to that in the gas phase. The picture in AN is intermediate between that of GP and THF.     

Effects of neutral and charged substituents on the infrared carbonyl stretching frequencies in phenyl and alkyl benzoates in DMSO

The carbonyl infrared stretching frequencies for 57 meta‐, para‐ and ortho‐substituted phenyl benzoates, C₆H₅CO₂C₆H₄‐X and alkylbenzoates, C₆H₅CO₂R, containing besides neutral substituents the charged substituents in phenoxy and alkoxy part in dimethyl sulfoxide (DMSO) have been recorded. The carbonyl stretching frequencies, ν_CO, for meta‐ and para‐substituted phenyl esters of benzoic acids in the case of neutral substituents were found to correlate well with the substituent constants, σ°. The ν_CO values for ortho derivatives correlated with the inductive substituent constants, σ_I, only. The values of constants for charged substituents, σ°_±, calculated on the basis of the ν_CO and the ¹³C NMR chemical shifts, δ_CO, in DMSO agree well with the σ°_± values for the corresponding ion pairs reported by Hoefnagel and Wepster and those determined from the log k values of the alkaline hydrolysis in 4.4 M NaCl solution at 50 °C. Thus, the values of substituent constants for ion pairs of charged substituents estimated on the basis of aqueous data could be successfully used in non‐aqueous solution (DMSO) simultaneously with neutral substituents in case the charged substituents were not completely ionized and are in ion pair form. Copyright © 2016 John Wiley & Sons, Ltd.     

Protein Phosphatase Activity and Acidic/Alkaline Balance as Factors Regulating the State of Phytochrome A and its Two Native Pools in the Plant Cell

Phytochrome A (phyA), the most versatile plant phytochrome, exists in the two isoforms, phyA′ and phyA′′, differing by the character of its posttranslational modification, possibly, by phosphorylation at the N‐terminal extension [Sineshchekov, V. (2010) J. Botany 2010, Article ID 358372]. This heterogeneity may explain the diverse modes of phyA action. We investigated possible roles of protein phosphatases activity and pH in regulation of the phyA pools' content in etiolated seedlings of maize and their extracts using fluorescence spectroscopy and photochemistry of the pigment. The phyA′/phyA′′ ratio varied depending on the state of development of seedlings and the plant tissue/organ used. This ratio qualitatively correlated with the pH in maize root tips. In extracts, it reached a maximum at pH ≈ 7.5 characteristic for the cell cytoplasm. Inhibition of phosphatases of the PP1 and PP2A types with okadaic and cantharidic acids brought about phyA′ decline and/or concomitant increase of phyA′′ in coleoptiles and mesocotyls, but had no effect in roots, revealing a tissue/organ specificity. Thus, pH and phosphorylation status regulate the phyA′/phyA′′ equilibrium and content in the etiolated (maize) cells and this regulation is connected with alteration of the processes of phyA′ destruction and/or its transformation into the more stable phyA′′.     

Solution and Gas‐Phase Acidities of all‐trans (all‐E) Retinoic Acid: An Experimental and Computational Study

Retinoic acid is of fundamental biological importance. Its acidity was determined in the gas phase and in acetonitrile solution by means of mass spectrometry and UV/Vis spectrophotometry, respectively. The intrinsic acidity is slightly higher than that of benzoic acid. In solution, the situation is opposite. The experimental systems were described theoretically applying quantum chemical methods (wave function theory and density functional theory). This allowed the determination of the molecular structure of the acid and its conjugate base, both in vacuo and in solution, and for computational estimates of its acidity in both phases.