Reaction mechanism of HSH and CH3SH with NH2CH2COCH2X (X = F and Cl) molecules

The reaction mechanism of model compounds H₂S and CH₃SH for cysteine proteases with NH₂CH₂COCH₂X (X = F and Cl) molecules has been investigated using DFT methods with B3LYP and B3PW91 hybrid density functionals at 6‐31+G* basis sets. The single point energy has been calculated for the above reactions with B3LYP and B3PW91 functionals using aug‐cc‐PVDZ infinite basis set in both gas and solution phases. The intrinsic reaction coordinates calculations have been performed to confirm that each transition state is linked by the desired reactants and products. The geometries and relative energies for various stationary points have been determined and discussed. The zero point vibrational energy corrections have been made to predict the reliable energy. The negative value of reaction energy indicates that the overall reaction profile is found to be exothermic. © 2007 Wiley Periodicals, Inc. Int J Quantum Chem, 2008     

Synthesis of novel benzo naphtho naphthyridines from 2,4-dicloroquinolines

A schematic study on the condensation of 2,4-dichloroquinolines ( 1 ) with 1-naphthyamine ( 2 ) in the presence of CuI as a catalyst to functionalized mono ( 3 ) and di ( 4 ) substituted naphthylamino quinolines was described. Consequently, these mono- and di-substituted amines on polyphosphoric acid-catalyzed cyclization reaction with p-toluic acid and acetic acid to yield the linear benzo[b]naphtho[2,1-g][1,8]naphthyridines ( 5 ) and angular benzo[b]naphtho[2,1-h] naphthyridines ( 6 ) in good yields. In addition to descried the similar synthesis of benzo[g]naphtho [2,1-b][1,8]naphthyridines ( 12 ) and benzo[h]naphtho[2,1-g][1,8]naphthyridines ( 13 ) from 2,4-dichlorobenzo[h]quinoline ( 8 ) with various anilines ( 9 ) through my intermediates ( 10 and 11 ).     

Molecular structure and conformational stability of allylisocyanate—post-Hartree–Fock and density functional theory studies

The molecular structure and conformational stability of allylisocyanate (CH₂CHCH₂NCO) molecule was studied using the ab initio and DFT methods. The geometries of possible conformers, C-gauche (δ=120°, θ=0°) (δ=C=C–C–N and θ=C–C–N=C) and C-cis N-trans (δ=0° and θ=180°) were optimized employing HF/6-31G^*, MP2/6-31G^* levels of theory of ab initio and BLYP, B3LYP, BPW91 and B3PW91 methods of DFT implementing the atomic basis set 6-311+G(d,p). The structural and physical parameters of the above conformers were discussed with the experimental and theoretical values of the related molecules, methylisocyanate and 3-fluoropropene. It has been found that the N=C=O bond angle is not linear as the experimental result for both the conformers and the theoretical bond angle is 173°. The rotational potential energy surfaces have been performed at the HF/6-31G^*, and MP2/6-31G^* levels of theory. The Fourier decomposition potentials were analysed at the HF/6-31G^*, and MP2/6-31G^* levels of theory. The HF/6-31G^* level of theory predicted that the C-gauche conformer is more stable than the C-cis N-trans conformer by 0.41 kJ/mol, but the MP2 and DFT methods predicted the C-cis N-trans conformer is found to be more stable than the C-gauche conformer. The calculated chemical hardness value at the HF/6-31G^* level of theory predicted the C-cis N-trans form is more stable than C-gauche form, whereas the chemical hardness value at the MP2/6-31G^* level of theory favours the slight preference towards the C-gauge conformer.     

Study of effective hardness and condensed Fukui functions using AIM,ab initio,and DFT methods

The effective chemical hardness for some triatomic molecules has been studied using the ‘atom in a molecule’ approach (AIM). Molecular chemical hardness values calculated from the effective chemical hardness of individual atoms agree with experimental and theoretically calculated molecular hardness values. Condensed Fukui functions have been calculated using Mulliken, NPA and AIM charges calculated by HF and B3LYP methods using the 6-31+G** basis set. All population schemes have predicted few negative Fukui functions, which correlate well with effective chemical hardness values.     

Microwave spectrum, molecular structure, dipole moment, and theoretical calculation of cyclopentanone oxime

The microwave spectra of cyclopentanone oxime (C₅H₈NOH) and its deuterated species (C₅H₈NOD) were observed in the frequency region from 9 to 40 GHz. Only a-type R-branch transitions were assigned in the vibrational ground and excited states. The rotational constants of normal species were determined to be A = 5870.80(33), B = 1917.021(8), and C = 1526.784(8) MHz in the vibrational ground state, and A = 5870.16(43), B = 1842.707(9), and C = 1479.401(9) MHz for deuterated species. The dipole moments were determined as μ_a = 0.80(10), μ_b = 0.20(10), and μ_c = 0.40(10) D. The ring-puckering vibrational states were observed up to v = 6. The vibrational mode was nearly harmonic. The fundamental frequency of the ring-puckering mode was found to be 70(20) cm⁻¹. The molecular structure of cyclopentanone oxime was determined to be a twisted configuration by comparing the observed and calculated rotational constants, planar moment of inertia, P_cc, and r_s coordinates of the hydroxyl hydrogen atom. On the molecular geometry, the bond angle, C₂C₁N₆ (Fig. 1), is larger than C₅C₁N₆ by ca. 6°, because of the steric repulsion between the methylene group of C₂ atom and hydroxyl group.     

Study of metal ions (Na+, K+) interaction with different conformations of glycine molecule

Interaction of metal ions (Na⁺, K⁺) with different binding sites, such as amino nitrogen, hydroxyl oxygen, and carbonyl oxygen for all gaseous conformers of glycine molecule were investigated using Density Functional Theory (B3LYP/6‐311++G**, B3PW91/6‐311++G**) methods. It was found that the order of stability of the conformers was changed due to the binding of the metal ion. The relative energy values show that the 7p conformer is more stable than the 1p conformer when a metal ion binds with the carbonyl oxygen. The intensity of interaction on hydroxyl oxygen is very low due to the low basicity of hydroxyl oxygen. The binding affinities of the complexes were calculated using the thermochemical properties. The relative energy and chemical hardness values predicted the most stable complex. The calculated condensed Fukui functions predict the favorable reactive site among the three binding sites. It is concluded that the reactivity of each binding site varies for each conformation due to the presence of intramolecular hydrogen bonding. © 2004 Wiley Periodicals, Inc. Int J Quantum Chem, 2005     

Studies of isomer stability using the maximum hardness principle (MHP)

In the present study, a number of positional and geometrical isomers have been considered to study the stability of isomers using the maximum hardness principle (MHP). All the considered isomeric molecules were optimized and the chemical hardness η and chemical potential μ were calculated at the HF/6‐31G level of theory. The MHP was not able to predict the stability of the most of the positional isomeric molecules, because of the variation in the chemical potential μ and external potential v(r), which arises due to the formation of a bond with different atoms. But, for the most of geometrical isomers, the MHP was able to predict the most stable conformer of the molecule. So, the present investigation suggests that the MHP is not applicable for the prediction of isomer stability for all the isomeric molecules. © 2000 John Wiley & Sons, Inc. Int J Quant Chem 76: 648–655, 2000     

Studies of chemical hardness and Fukui function using the exact solution of the density functional theory

Neal's procedure has been applied to determine the electron density ρ(x) for the H₂ molecule. The chemical hardness has been calculated employing the ab initio and density functional theory methods and the values are found to be reasonably good. The principle of maximum hardness (PMH) was tested. Fukui functions and the distribution of electron density around the internuclear distance were studied employing the electron density of the H₂ molecule. © 2001 John Wiley & Sons, Inc. Int J Quant Chem 81: 4–10, 2001     

Polarizability and chemical hardness—A combined study of wave function and density functional theory approach

A flexible model for generating the molecular wave function and electron density for diatomic molecules is developed employing the quadratic anharmonic oscillator and Morse potential. The chemical hardness, Fukui function, and polarizability were calculated using the electron density of the molecules, and the values are found to be reasonably good. © 2001 John Wiley & Sons, Inc. Int J Quantum Chem, 2001     

Quantum chemical studies on molecular structural conformations and hydrated forms of salicylamide and O‐hydroxybenzoyl cyanide

Ab initio and density functional theory (DFT) methods have been employed to study the molecular structural conformations and hydrated forms of both salicylamide (SAM) and O‐hydroxybenzoyl cyanide (OHBC). Molecular geometries and energetics have been obtained in the gaseous phase by employing the Møller–Plesset type 2 MP2/6‐311G(2d,2p) and B3LYP/6‐311G(2d,2p) levels of theory. The presence of an electron‐releasing group (SAM) leads to an increase in the energy of the molecular system, while the presence of an electron‐withdrawing group (OHBC) drastically decreases the energy. Chemical reactivity parameters (η and μ) have been calculated using the energy values of the highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO) obtained at the Hartree–Fock (HF)/6‐311G(2d,2p) level of theory for all the conformers and the principle of maximum hardness (MHP) has been tested. The condensed Fukui functions have been calculated using the atomic charges obtained through the natural bond orbital (NBO) analysis scheme for all the optimized structures at the B3LYP/6‐311G(2d,2p) level of theory, and the most reactive sites of the molecules have been identified. Nuclear magnetic resonance (NMR) studies have been carried out at the B3LYP/6‐311G(2d,2p) level of theory for all the conformers in the gaseous phase on the basis of the method of Cheeseman and coworkers. The calculated chemical shift values have been used to discuss the delocalization activity of the electron clouds. The dimeric structures of the most stable conformers of both SAM and OHBC in the gaseous phase have been optimized at the B3LYP/6‐311G(2d,2p) level of theory, and the interaction energies have been calculated. The most stable conformers of both compounds bear an intramolecular hydrogen bond, which gives rise to the formation of a pseudo‐aromatic ring. These conformers have been allowed to interact with the water molecule. Special emphasis has been given to analysis of the intermolecular hydrogen bonds of the hydrated conformers. Self‐consistent reaction field (SCRF) theory has been employed to optimize all the conformers in the aqueous phase (ε = 78.39) at the B3LYP/6‐311G(2d,2p) level of theory, and the solvent effect has been studied. Vibrational frequency analysis has been performed for all the optimized structures at MP2/6‐311G(2d,2p) level of theory, and the stationary points corresponding to local minima without imaginary frequencies have been obtained for all the molecular structures. © 2005 Wiley Periodicals, Inc. Int J Quantum Chem, 2005