THE 'OPSIN SHIFT' IN BACTERIORHODOPSIN: STUDIES WITH ARTIFICIAL BACTERIORHODOPSINS

Abstract— The difference (in cm⁻¹) in absorption maxima between the protonated Schiff base of retinals and the pigment derived therefrom has been defined as the opsin shift. It represents the influence of the opsin binding site on the chromophore. The analysis of the opsin shifts of a series of dihydrobacteriorhodopsins has led to the external point-charge model, which in addition to a counter anion near the Schiff base ammonium, carries another negative charge in the vicinity of the β-ionone ring. This is in striking contrast to the external point-charge model proposed earlier for the bovine visual pigment. The absorption maxima of rhodopsins formed from bromo- and phenyl retinals support the two models. A retinal carrying a photoaffinity label has yielded a nonbleachable bacteriorhodopsin.     

Four new cycloartane glycosides from Aquilegia vulgaris

Four new cycloartane glycosides, named aquilegiosides G-J, were isolated from the dried aerial parts of Aquilegia vulgaris. Their structures were determined by spectroscopic analysis and chemical evidence.     

Emission of 2-phenylethanol from its β-d-glucopyranoside and the biogenesis of these compounds from [H8] l-phenylalanine in rose flowers

The hydrolysis of 2-phenylethyl β-d-glucopyranoside (3) was found to be partially inhibited by feeding with 2-phenyl-N-glucosyl-acetamidiumbromide (8), a β-glucosidase inhibitor, resulting in a decrease in the diurnal emission of 2-phenylethanol (2) from Rosa damascena Mill. flowers. Detection of [1,1,2,2′,3′,4′,5′,6′-²H₈]-2 and [1,2,2′,3′,4′,5′,6′-²H₇]-2 from R. ‘Hoh-Jun’ flowers fed with [1,1,2,2′,3′,4′,5′,6′-²H₈]-3 suggested that β-glucosidase, alcohol dehydrogenase, and reductase might be involved in scent emission. Comprehensive GC-SIM analyses revealed that [1,2,2,2′,3′,4′,5′,6′-²H₈]-2 and [1,2,2,2′,3′,4′,5′,6′-²H₈]-3 must be biosynthesized from [1,2,2,2′,3′,4′,5′6′-²H₈] l-phenylalanine ([²H₈]-1) with a retention of the deuterium atom at α-position of [²H₈]-1.     

Electronic structural changes between nickel(II)-semiquinonato and nickel(III)-catecholato states driven by chemical and physical perturbation

The selective synthesis of tetracoordinate square-planar low-spin nickel(II)-semiquinonato (Ni(II)-SQ) and nickel(III)-catecholato (Ni(III)-Cat) complexes, 1 and 2, respectively, was achieved by using bidentate ligands with modulated nitrogen-donor ability to the nickel ion. The electronic structures of 1 and 2 were revealed by XPS and EPR measurements. The absorption spectra of 1 and 2 in a noncoordinating solvent, dichloromethane (CH2Cl2), are completely different from those in tetrahydrofuran (THF), being a coordinating solvent. As expected from this result, the gradual addition of N,N-dimethylformamide (DMF), which is also a coordinating solvent like THF, into a solution of 1 or 2 in CH2Cl2 leads to color changes from blue (for 1) and brown (for 2) to light green, which is the same color observed for solutions of 1 or 2 in THF. Furthermore, the same color changes are induced by varying the temperature. Such spectral changes are attributable to the transformation from square-planar low-spin Ni(II)-SQ and Ni(III)-Cat complexes to octahedral high-spin Ni(II)-SQ ones, caused by the coordination of two solvent molecules to the nickel ion.     

Structural modulation of Cu(I) and Cu(II) complexes of sterically hindered tripyridine ligands by the bridgehead alkyl groups

Structures of Cu(I) and Cu(II) complexes of sterically hindered tripyridine ligands RL = tris(6-methyl-2-pyridyl)methane (HL), 1,1,1-tris(6-methyl-2-pyridyl)ethane (MeL), and 1,1,1-tris(6-methyl-2-pyridyl)propane (EtL), [Cu(RL)(MeCN)]PF(6) (1-3), [Cu(RL)(SO(4))] (4-6), and [Cu(RL)(NO(3))(2)] (7-9), have been explored in the solid state and in solution to gain some insights into modulation of the copper coordination structures by bridgehead alkyl groups (CH, CMe, and CEt). The crystal structures of 1-9 show that RL binds a copper ion in a tridentate facial-capping mode, except for 3, where EtL chelates in a bidentate mode with two pyridyl nitrogen atoms. To avoid the steric repulsion between the bridgehead alkyl group and the 3-H(py) atoms, the pyridine rings in Cu(I) and Cu(II) complexes of MeL and EtL shift toward the Cu side as compared to those in Cu(I) and Cu(II) complexes of HL, leading to the significant differences in the nonbonding interatomic distances, H.H (between the 3-H(py) atoms), N.N (between the N(py) atoms), and C.C (between the 6-Me carbon atoms), the Cu-N(py), Cu-N(MeCN), and Cu-O bond distances, and the tilt of the pyridine rings. The copper coordination geometries in 4-6, where a SO(4) ligand chelates in a bidentate mode, are varied from a square pyramid of 4 to distorted trigonal bipyramids of 5 and 6. Such structural differences are not observed for 7-9, where two NO(3) ligands coordinate in a monodentate mode. The structures of 1-9 in solution are investigated by means of the electronic, (1)H NMR, and ESR spectroscopy. The (1)H NMR spectra show that the structures of 1-3 in the solid state are kept in solution with rapid coordination exchange of the pyridine rings. The electronic and the ESR spectra reveal the structural changes of 5 and 6 in solution. The bridgehead alkyl groups and 6-Me groups in the sterically hindered tripyridine ligand play important roles in modulating the copper coordination structures.     

Chain length effect of the counterion on the partial molal volume of alkanesulfonates

The partial molal volumes of two series of homologous surfactants, n-alkylammonium decanesulfonates and a, ?-alkanediammonium nonanesulfonates, were measured below and above their CMC in aqueous solution. Their counterions were n-alkylammonium and a, ?-alkanediammonium. The relationship between the partial molal volume and the chain length of the counterion below the CMC had an inflection point. The relationship between them, above the CMC, was almost linear. In the case of the alkylammonium salts, the values of the volume change of micellization were almost the same when the chain length of the counterions was shorter than the butyl, and increased with an increase in the chain length when it was longer than the propyl. In the case of the alkanediammonium salts, the volume change of micellization showed a small decrease with the chain length when it was shorter than octane, and was very large for the nonane ammonium salt. The large positive increase in the volume change with the increase in the chain length of the counterion can be explained by the hydrophobic interaction between the alkyl chain of the counterion and the hydrophobic core of the micelle.     

Application of AMS <Superscript>14</Superscript>C measurements to criminal investigations

¹⁴C variations of atmospheric CO₂ as well as carbonaceous fraction of living materials, such as collagen from tooth and bone, tissue, skin, hair, nail, etc., of modern humans are influenced by ¹⁴C produced artificially by nuclear bomb tests in the atmosphere from late 1950s to early 1960s. By careful investigation of ¹⁴C concentration of tree rings and human body samples formed in this time intervals, we can establish a relationship of their ¹⁴C concentrations with calendar year. By applying this relation to a sample whose ¹⁴C concentration can be measured, we can estimate the formation age of the sample. In addition, sources of the chemicals that were used in some criminal cases can be possibly identified, by their carbon isotope ratios (¹³C/¹²C and ¹⁴C/¹²C). This method of age determination has been applied to a forensic study, i.e., two criminal cases of murder. For each case, by comparing the measured ¹⁴C abundances of several pieces of hair and one tooth (the third molar) from the body with the annual change on concentrations of bomb-produced ¹⁴C, the time of death of the body and the age of the victim were estimated. The estimated values were consistent with the real ones that were revealed by the confession of the real murderers.     

Manipulating the Through‐Space Spin–Spin Interaction of Organic Radicals in the Confined Cavity of a Self‐Assembled Cage

We show a new approach to manipulating the through‐space spin–spin interaction by utilizing the confined cavity of a self‐assembled M₆L₄ coordination cage. The coordination cage readily encapsulates stable organic radicals in solution, which brings the spin centers of the radicals closer to each other. In sharp contrast to the fact that the radical in solution in the absence of the cage is in a doublet state, in the presence of the cage through‐space spin–spin interaction is induced through cage‐encapsulation effects in solution as well as in the solid state, resulting in the triplet state of the complex. These results were confirmed by ESR spectroscopy and X‐ray crystallography. The quantity of triplet species generated by encapsulation in the cage increases with increasing affinity of the radicals to the cage. We estimated the affinity between several types of guests and the cage in solution by cyclic voltammetry. We also demonstrate that the through‐space interaction of organic radicals within the self‐assembled coordination cage can be controlled by external stimuli such as heat or pH.