Molecular dynamics study on the ligand recognition by tandem SH3 domains of p47phox, regulating NADPH oxidase activity

The phagocyte NADPH oxidase complex plays a crucial role in host defense against microbial infection through the production of superoxides. Chronic granulomatous disease (CGD) is an inherited immune deficiency caused by the absence of certain components of the NADPH oxidase. Key to the activation of the NADPH oxidase is the cytoplasmic subunit p47phox, which includes the tandem SH3 domains (N-SH3 and C-SH3). In active phagocytes, p47phox forms a stable complex with the cytoplasmic region of membrane subunit p22phox that forms a left-handed polyproline type-II (PPII) helix conformation. In this report, we have analyzed the conformational changes of p47phox-p22phox complexes of wild-type and three mutants, which have been detected in CGD patients, using molecular dynamics simulations. We have found that in the wild-type, two basal planes of PPII prism in cytoplasmic region of p22phox interacted with N-SH3 and C-SH3. In contrast, in the modeled mutants, the residue at the ape of PPII helix, which interacts simultaneously with both of the tandem SH3 domains in the wild-type, moved toward C-SH3. Furthermore, interaction energies of the cytoplasmic region of p22phox with C-SH3 tend to decrease in these mutants. All these findings led us to conclude that interactions between N-SH3 of p47phox and PPII helix, which is formed by cytoplasmic region of p22phox, may play a significant role in the activation of the NADPH oxidase.     

Sequential ruthenium-catalyzed hydroamination and rhenium-catalyzed C-H bond activation leading to indene derivatives

[reaction: see text] Formal [3 + 2] annulation of arylacetylenes and alpha,beta-unsaturated carbonyl compounds is achieved in a one-pot reaction by successive treatment of the acetylenes with aniline and a catalytic amount of Ru(3)(CO)(12) and NH(4)PF(6) and C-H bond activation catalyzed by [ReBr(CO)(3)(thf)](2). The result suggests that the second rhenium-catalyzed indene formation is not disturbed by the first catalyst system.     

Engineered biosynthesis of plant polyketides: manipulation of chalcone synthase

[reaction: see text]. Chalcone synthase (CHS) is a plant-specific type III polyketide synthase catalyzing condensation of 4-coumaroyl-CoA with three molecules of malonyl-CoA. Surprisingly, it was demonstrated that S338V mutant of Scutellaria baicalensis CHS produced octaketides SEK4/SEK4b from eight molecules of malonyl-CoA. Further, the octaketides-forming activity was dramatically increased in a CHS triple mutant (T197G/G256L/S338T). The functional conversion is based on the simple steric modulation of a chemically inert residue lining the active-site cavity.     

2,7-diphenyl[1]benzoselenopheno[3,2-b][1]benzoselenophene as a stable organic semiconductor for a high-performance field-effect transistor

[1]Benzoselenopheno[3,2-b][1]benzoselenophene (BSBS) and its 2,7-diphenyl derivative (DPh-BSBS) were readily synthesized from diphenylacetylene and bis(biphenyl-4-yl)acetylene, respectively, with a newly developed straightforward selenocyclization protocol. In contrast to the parent BSBS that has poor film-forming properties, the diphenyl derivative DPh-BSBS formed a good thin film on the Si/SiO(2) substrate by vapor deposition. X-ray diffraction examination revealed that this film consists of highly ordered molecules that are nearly perpendicular to the substrate, making it suitable for use in the fabrication of organic field-effect transistors (OFETs). When fabricated at different substrate temperatures (room temperature, 60 degrees C, and 100 degrees C) in a "top-contact" configuration, all the DPh-BSBS-based OFET devices exhibited excellent p-channel field-effect properties with hole mobilities >0.1 cm(2) V(-1) s(-1) and current on/off ratios of approximately 10(6). This high performance was essentially maintained over 3000 continuous scans between V(g) = +20 and -100 V and reproduced even after storage under ambient laboratory conditions for at least one year.     

Flow injection determination of trace amounts of copper based on its catalytic effect on the oxidation of 3, 3′, 5, 5′-tetramethylbenzidine by cumene hydroperoxide

A sensitive and selective flow-injection method has been developed for the catalytic determination of copper(II). The method is based on the oxidation of 3,3′,5,5′-tetramethylbenzidine by cumene hydroperoxide as an organic oxidant in an acidic medium. A highly sensitivity has been achieved by adding 2,9-dimethyl-1,10-phenanthroline as an activator and benzyldimethyltetradecylammonium chloride (zephiramine) as a surfactant. The reaction was spectrophotometrically monitored by measuring the increase in absorbance of oxidation product of 3,3′,5,5′-tetramethylbenzidine at 650 nm. The calibration curve was linear over the range of 0.5–3.0 ng mL^?1 at a rate of 30 samples h^?1. Most of the diverse ions did not interfere with the determination of copper up to at least 50-fold excess. The serious interference by iron(III) was eliminated by addition of fluoride. The method was successfully applied to the determination of copper in water samples.     

Synthesis of 3-substituted 3H-indol-3-ols by the reaction of 2-isocyanophenyl ketones with Grignard reagents

A facile method for the synthesis of 3-substituted 3H-indol-3-ols has been developed. Thus, 2-isocyanophenyl ketones are allowed to react with various Grignard reagents to give the corresponding desired indolol derivatives in generally fair to good yields. The formation of 3-aryl-2,3-dimethylindolin-3-ols by the reaction of 2-isocyanobenzophenones with 2 M amounts of methylmagnesium bromide is also reported.     

Polyaniline–DNA microsphere formation by simple electropolymerization

Polyaniline (PANI) microspheres were prepared by electrochemical polymerization. To obtain PANI having novel micro- and nanostructures, by the potential scan technique, aniline was electropolymerized in the presence of DNA using four polymerizing solutions containing different acids: H₂SO₄, C₆H₅SO₃H, HClO₄, and CF₃COOH. The growth rate of the PANI film on the electrode surface decreased by the presence of DNA, suggesting that DNA interacted with the growing PANI molecules during the electropolymerization. The growth rate also depended on the type of acid, i.e., the anion, in the polymerizing solution and was in the order of SO₄ ²⁻ > C₆H₅SO₃ ⁻ > ClO₄ ⁻ > CF₃COO⁻, which significantly coincided with the reverse order of the Hofmeister series representing the lyophilicity of the anion. When aniline was electropolymerized in the CF₃COOH polymerizing solution containing DNA, PANI microspheres were obtained without any templates. This PANI showed a sufficient redox activity in the less acidic solution in which the ordinary PANI has a slight redox activity. On the other hand, the electronic state of the PANI differed from the ordinary ones; a new absorption band was evident at 620 nm. The difference in the redox activity and electronic state suggested that the DNA molecules were incorporated in the PANI and electronically interacted with the PANI molecules.     

Click Chemistry for the Identification of G‐Quadruplex Structures: Discovery of a DNA–RNA G‐Quadruplex

A trap that closes with a “click” : The copper‐catalyzed azide–alkyne cycloaddition can occur in different G‐quadruplex structures (see scheme). The species trapped by the click reaction can then be separated and analyzed. By using this approach, a DNA–RNA hybrid‐type G‐quadruplex structure formed by human telomeric DNA and RNA sequences was detected.

     

Direct Catalytic Asymmetric Mannich‐Type Reaction of Thioamides

Taking the reins : The title transformation of thioamides and N‐diphenylphosphinoyl imines is described. By harnessing the power of cooperative catalysis between a soft Lewis acid and a hard Brønsted base, thioamide carbon pronucleophiles can furnish Mannich products (see scheme). Divergent transformation of the thioamide functionality highlights the utility of this methodology.