Computational quantum magnetism: Role of noncollinear magnetism

We are witnessing today a golden age of innovation with novel magnetic materials and with discoveries important for both basic science and device applications. Computation and simulation have played a key role in the dramatic advances of the past and those we are witnessing today. A goal-driving computational science—simulations of every-increasing complexity of more and more realistic models has been brought into greater focus with greater computing power to run sophisticated and powerful software codes like our highly precise full-potential linearized augmented plane wave (FLAPW) method. Indeed, significant progress has been achieved from advanced first-principles FLAPW calculations for the predictions of surface/interface magnetism. One recently resolved challenging issue is the role of noncollinear magnetism (NCM) that arises not only through the SOC, but also from the breaking of symmetry at surfaces and interfaces. For this, we will further review some specific advances we are witnessing today, including complex magnetic phenomena from noncollinear magnetism with no shape approximation for the magnetization (perpendicular MCA in transition-metal overlayers and superlattices; unidirectional anisotropy and exchange bias in FM and AFM bilayers; constricted domain walls important in quantum spin interfaces; and curling magnetic nano-scale dots as new candidates for non-volatile memory applications) and most recently providing new predictions and understanding of magnetism in novel materials such as magnetic semiconductors and multi-ferroic systems.     

A new hydrophobic linker effective for the in situ synthesis of DNA-CPG conjugates as tools for SNP analysis

DNA chips consisting of DNA oligonucleotide probes immobilized on the surface of solid supports are very powerful tools for rapid analysis of multiple samples. In this Letter we describe a new method for the efficient synthesis of DNA probes without their serious elimination by use of a new hydrophobic 16-hyroxydecanoic linker and a new non-aqueous reagent of MeNH₂/THF for the deprotection of the base and phosphate protecting groups on CPG resins. The elimination of DNA probes in this new method could be suppressed more than 20-fold compared with the previous method using a hexaethylene glycol linker and concd NH₄OH. Moreover, we carried out SNPs detection by use of our DNA-CPG conjugate to show the utility of our new linker and deprotection conditions.     

Alkali Metal and Trimethylsilyl Carbamoselenothioates – Synthesis,Structure, and some Reactions

This paper describes the synthesis and some reactions of potassium, rubidium, cesium and trimethylsilyl carbamoselenothioates. The potassium salts were synthesized in 70–80 % yields by reacting the corresponding thiocarbamoyl chlorides with potassium selenide in acetonitrile. Furthermore, the rubidium and cesium salts were obtained in good yields by treating the trimethylsilyl esters with the corresponding metal fluorides. The crystal structure of acetonitrile‐solvated potassium N,N‐dimethylcarbamoselenothioate consisted of dimeric units, featuring μ‐carbamoselenothioate anions associated with potassium cations that are located on the upper and lower sides of a plane involving two opposing carbamoselenothioate groups. These heavier alkali metal salts readily reacted with alkyl halides to give both S‐ and Se‐alkyl esters. The reaction of the potassium salts with trimethylsilyl chlorides forms S‐ and Se‐trimethylsilyl carbamoselenothioates which are in equilibrium. The reaction of the salts and silyl esters with organo Group‐14 and ‐15 elements halides gave exclusively the corresponding Se‐substituted products in good yields.     

Generic guiding principle of HTSC material design for high-field application

Through the analyses on the irreversibility lines (ILLs) under H||c for various high-T_c superconducting (HTSC) single-crystalline samples, we found two universal functions representing ILLs. In these functions, the electromagnetic anisotropy factor γ² plays a crucial role. The appropriate chemical substitution, such as Bi(Pb)2212, is an effective method to improve flux pinning properties via decreasing γ².     

Application of Inductively Coupled Plasma Mass Spectrometry (ICP-MS) to Multi-Element Analysis of Human Organs

Abstract

Elemental concentrations of internal organs (cerebrum, cerebellum, heart, spleen, liver and kidney) of Japanese were measured with inductively coupled plasma mass spectrometry (ICP-MS). Sixty-one elements were determined simultaneously, and concentrations of some trace elements in human organs, on which information are scarcely available in the literature, were obtained. The analytical values obtained by ICP-MS and those by other methods were compared and fairly good agreement was found for Cd, Zn and Fe. Moderate agreement was found for Se and Hg, but discrepancy was observed for Mg and Na. Unacceptable values were obtained for some elements, such as Ti, Sc or Ge, probably due to polyatomic molecular interference.     

Intramolecular stable carbon isotopic analysis of archaeal glycosyl tetraether lipids

Glycolipids are prominent constituents in the membranes of cells from all domains of life. For example, diglycosyl‐glycerol dibiphytanyl glycerol tetraethers (2Gly‐GDGTs) are associated with methanotrophic ANME‐1 archaea and heterotrophic benthic archaea, two archaeal groups of global biogeochemical importance. The hydrophobic biphytane moieties of 2Gly‐GDGTs from these two uncultivated archaeal groups exhibit distinct carbon isotopic compositions. To explore whether the isotopic compositions of the sugar headgroups provide additional information on the metabolism of their producers, we developed a procedure to analyze the δ¹³C values of glycosidic headgroups. Successful determination was achieved by (1) monitoring the contamination from free sugars during lipid extraction and preparation, (2) optimizing the hydrolytic conditions for glycolipids, and (3) derivatizing the resulting sugars into aldononitrile acetate derivatives, which are stable enough to withstand a subsequent column purification step. First results of δ¹³C values of sugars cleaved from 2Gly‐GDGTs in two marine sediment samples, one containing predominantly ANME‐1 archaea and the other benthic archaea, were obtained and compared with the δ¹³C values of the corresponding biphytanes. In both samples the dominant sugar headgroups were enriched in ¹³C relative to the corresponding major biphytane. This ¹³C enrichment was significantly larger in the putative major glycolipids from ANME‐1 archaea (～15‰) than in those from benthic archaea (<7‰). This method opens a new analytical window for the examination of carbon isotopic relationships between sugars and lipids in uncultivated organisms. Copyright © 2010 John Wiley & Sons, Ltd.     

Drying dissipative structures of colloidal crystals of silica spheres coated with polymer brushes of poly(carboxymethyl betaine)

Drying patterns of colloidal crystals of colloidal silica spheres coated with the brushes of zwitterionic poly(carboxymethyl betaine) (SiP-PCMB) and their parent silica spheres (SiP) were studied on a cover glass, a watch glass, and a Petri glass dish. Crystal structures kept the whole process of dryness of the suspensions of SiP-PCMB and SiP. Crystal structures of the dried films of SiP-PCMB were kept stable even when the initial suspensions contained 5 mM of sodium chloride, which is the important role of the excluded volume effects of the shells of the polymer brushes. On the other hand, crystal structures of SiP spheres in the dried films were much unstable and melted in the presence of 5 mM sodium chloride. In the suspension state, colloidal crystallization of SiP-PCMB took place stably by the contribution of the excluded volume effects besides the extended electrical double layers compared with that of SiP spheres, where only the double layer effect contributes to the crystallization. The fractal patterns of the complexation of SiP-PCMB or SiP spheres with sodium chloride were observed microscopically in the dried films. Several kinds of dissipative crystallization such as array and/or accumulation of the crystallites were observed, and the importance of the convectional and sedimentation processes during the course of dryness was demonstrated.     

Conformational preferences and orbital interactions for methyl haloacetates

Conformational preferences and orbital interactions of methyl chloroacetate (1), methyl bromoacetate (2) and methyl iodo-acetate (3) were analyzed using experimental infra-red data, theoretical calculations and NBO analyses. The conformational equilibria of compounds 1-3 can be represented by their cis and gauche rotamers. The gauche form of 1 is stable in the vapour phase and in a non-polar solvent, but the cis is predominant in a polar solvent. For 2 the gauche form is more stable than the cis, in both the vapour and liquid phases, but for compound 3 only the gauche form was observed both in vapour phase as in solution. These conformational preferences were attributed to the orbital interaction between two antibonding orbitals pi(C=O)(*)-->sigma(C-X)(*). This unexpected interaction was possibly due to the high (0.2) electron density on pi(C=O)(*), which results from the interaction between ether oxygen lone pair and pi(C=O)(*).     

Comparative analysis of binding energy of chymostatin with human cathepsin A and its homologous proteins by molecular orbital calculation

Cathepsin A is a mammalian lysosomal enzyme that catalyzes the hydrolysis of the carboxy-terminal amino acids of polypeptides and also regulates beta-galactosidase and neuraminidase-1 activities through the formation of a multienzymic complex in lysosomes. Human cathepsin A (hCathA), yeast carboxypeptidase (CPY), and wheat carboxypeptidase II (CPW) belong to the alpha/beta-hydrolase fold family. They have structurally similar active-site clefts, but there are small differences in the amino acid residues comprising their active sites that might determine the substrate specificity and sensitivity to microbial inhibitors including chymostatin. To examine the selectivity and binding mechanism of chymostatin as to hCathA, CPY, and CPW at the atomic level, we analyzed the interaction energy between chymostatin and each protein quantitatively by semiempirical molecular orbital calculation AM1 with the continuum solvent model. We predicted the electrostatic repulsion between the P3 cyclic arginine residue of the inhibitor and the Arg344 in the S3 active subsite of hCathA. Genetic conversion of Arg344 of the wild-type hCathA to Ile also caused an increase in its sensitivity to chymostatin, which was correlated with the decrease in the interaction energy calculated with the molecular orbital method. The present results suggest that such molecular calculation should be useful for evaluating the interactions between ligands, including inhibitors and homologous enzymes, in their docking models.     

Spontaneous formation of closed-field torus equilibrium via current jump observed in an electron-cyclotron-heated plasma

Spontaneous current jump resulting in the formation of closed field equilibrium has been observed in electron-cyclotron-heated toroidal plasmas under steady external fields composed of a toroidal field and a relatively weak vertical field in the low aspect ratio torus experiment device. This bridges the gap between the open field equilibrium maintained by a pressure-driven current in the external field and the closed field equilibrium at a larger current. Experimental results and theoretical analyses suggest a current jump model that is based on the asymmetric electron confinement along the field line appearing upon simultaneous transitions of field topology and equilibrium.