Intestinal permeability of cyclic peptides: common key backbone motifs identified

Insufficient oral bioavailability is considered as a key limitation for the widespread development of peptides as therapeutics. While the oral bioavailability of small organic compounds is often estimated from simple rules, similar rules do not apply to peptides, and even the high oral bioavailability that is described for a small number of peptides is not well understood. Here we present two highly Caco-2 permeable template structures based on a library of 54 cyclo(-D-Ala-Ala(5)-) peptides with different N-methylation patterns. The first (all-trans) template structure possesses two β-turns of type II along Ala(6)-D-Ala(1) and Ala(3)-Ala(4) and is only found for one peptide with two N-methyl groups at D-Ala(1) and Ala(6) [(NMe(1,6)]. The second (single-cis) template possesses a characteristic cis peptide bond preceding Ala(5), which results in type VI β-turn geometry along Ala(4)-Ala(5). Although the second template structure is found in seven peptides carrying N-methyl groups on Ala(5), high Caco-2 permeability is only found for a subgroup of two of them [NMe(1,5) and NMe(1,2,4,5)], suggesting that N-methylation of D-Ala(1) is a prerequisite for high permeability of the second template structure. The structural similarity of the second template structure with the orally bioavailable somatostatin analog cyclo(-Pro-Phe-NMe-D-Trp-NMe-Lys-Thr-NMe-Phe-), and the striking resemblance with both β-turns of the orally bioavailable peptide cyclosporine A, suggests that the introduction of bioactive sequences on the highly Caco-2 permeable templates may result in potent orally bioavailable drug candidates.     

Some comments on the Coriolis attenuation problem

To explore the Coriolis attenuation problem we have carried out a schematici _13/2 rotor plus single quasi-particle band-mixing calculation. The results reveal that the calculations are largely insensitive towards the location of the Fermi energy near the low-K single particle states only, and therefore are incapable of taking into account the transition from ‘full’ decoupling to ‘partial’ decoupling as the Fermi level is increased. We trace the possible reasons for this insensitivity and find that this may be primarily due to thebcs approximation for calculating the quasiparticle energies.     

Effective potential and the viscosity of complex polar fluids

The effective potential is used to calculate the viscosity of complex polar vapours like water and ammonia. The agreement between theory and experiment confirms the validity of the effective potential.     

Conformational studies of the linear homooligomers of a glucose-derived furanoid sugar amino acid

Conformational analysis of the linear tetramer of the glucose-derived furanoid sugar amino acid 1 by NMR and constrained molecular dynamics studies revealed that the fully protected tetramer 2a has a well-defined structure in CDCl₃ with repeating β-turns, each involving a 10-membered ring structure with intramolecular hydrogen bonds between NH_i → CO_i−2. Its deprotected versions 2b and 2c showed aggregation in organic solvents with structures similar to that of 2a.     

A selective synthesis of alkenylmercuric chlorides via alkenylalanes

The reaction of alkenylalanes with mercuric chloride in THF produces stereospecically the coresponding alkenylmercuric chlorides in high yields.     

Gold as hydrogen. An experimental and theoretical study of the structures and bonding in disilicon gold clusters Si2Au(n)- and Si2Au(n) (n = 2 and 4) and comparisons to Si2H2 and Si2H4

In a previous communication, we showed that a single Au atom behaves like H in its bonding to Si in a series of Si-Au clusters, SiAu(n) (n = 2-4) (Kiran et al. Angew. Chem., Int. Ed. 2004, 43, 2125). In this article, we show that the H analogy of Au is more general. We find that the chemical bonding and potential energy surfaces of two disilicon Au clusters, Si(2)Au(2) and Si(2)Au(4), are analogous to Si(2)H(2) and Si(2)H(4), respectively. Photoelectron spectroscopy and ab initio calculations are used to investigate the geometrical and electronic structures of Si(2)Au(2)(-), Si(2)Au(4)(-), and their neutral species. The most stable structures for both Si(2)Au(2) and Si(2)Au(2)(-) are found to be C(2)(v), in which each Au bridges the two Si atoms. For Si(2)Au(4)(-), two nearly degenerate dibridged structures in a cis (C(2)(h)) and a trans (C(2)(v)) configuration are found to be the most stable isomers. However, in the neural potential energy surface of Si(2)Au(4), a monobridged isomer is the global minimum. The ground-state structures of Si(2)Au(2)(-) and Si(2)Au(4)(-) are confirmed by comparing the computed vertical detachment energies with the experimental data. The various stable isomers found for Si(2)Au(2) and Si(2)Au(4) are similar to those known for Si(2)H(2) and Si(2)H(4), respectively. Geometrical and electronic structure comparisons with the corresponding silicon hydrides are made to further establish the isolobal analogy between a gold atom and a hydrogen atom.