Fragmentation of Neutral Amino Acids and Small Peptides by Intense, Femtosecond Laser Pulses

High power femtosecond laser pulses have unique properties that could lead to their application as ionization or activation sources in mass spectrometry. By concentrating many photons into pulse lengths approaching the timescales associated with atomic motion, very strong electric field strengths are generated, which can efficiently ionize and fragment molecules without the need for resonant absorption. However, the complex interaction between these pulses and biomolecular species is not well understood. To address this issue, we have studied the interaction of intense, femtosecond pulses with a number of amino acids and small peptides. Unlike previous studies, we have used neutral forms of these molecular targets, which allowed us to investigate dissociation of radical cations without the spectra being complicated by the action of mobile protons. We found fragmentation was dominated by fast, radical-initiated dissociation close to the charge site generated by the initial ionization or from subsequent ultrafast migration of this charge. Fragments with lower yields, which are useful for structural determinations, were also observed and attributed to radical migration caused by hydrogen atom transfer within the molecule.

Asymmetric synthesis of A-240610.0 via a new atropselective approach for axially chiral biaryls with chirality transfer

A new approach for atropselective preparation of axially chiral biaryl was developed. This process proceeded through a chirality transfer from a stereogenic center of a secondary alcohol to the stereogenic axis via regioselective intramolecular silyl group migration. This methodology allowed for the preparation of a single atropisomer 2 in good yield (85%) with high diastereoselectivity (99:1), which subsequently led to the successful development of an efficient asymmetric synthesis of A-240610.0, 1.     

Ã2Σ+ → X̃+Π Emission spectra of the phosphaethyne cations,HCP+ and DCP+

The electron impact excited òΣ⁺ → X?⁺Π emission spectra of HCP⁺ and DCP⁺ have been observed. The spin-orbit split 0-0 band has maxima at 593.7 and 599.0 nm for HCP⁺ and 593.6 and 598.8 nm for DCP⁺. Short progressions in the V₃(CP) vibration are observed. a₀, v₃ and the upper-state lifetime are determined.     

Microstructure and optical properties of PMMA/gel silica glass composites

FT-Raman and near infrared (NIR) spectroscopies have been used to investigate PMMA/gel silica composites prepared by the post-doping method. The changes of the vibrational features of silanols on the silica surface and ester carbonyls from PMMA indicate that the two phases in the organic-inorganic hybrids interact with each other through hydrogen-bonding. Unlike unmodified gel silica, the as-prepared composites are hydrophobic due to the elimination of the accessible adsorbing sites provided by the surface silanols. Residual water inherited from the preparation process is not evenly distributed in the composites but locally enriched on the silica surface by hydrogen-bonding to limited surface silanols. The conversion efficiency of MMA-to-PMMA depends not only on the polymerisation conditions applied, but also on the initial structure of the sol-gel substrate used. The composites show high optical transmittance in the near UV and visible region due to a reduction of scattering from an originally porous structure. However, their application in the near IR is restricted due to the combined vibrational energy absorptions by different silanol and water species, and in particular by C-H functional groups from organic modifiers.     

Perspectives on updates,clarifications and controversies in chromatographic assay guidance for bioanalytical method validation from major regulatory agencies and organizations

Bioanalysis, a key supporting function for generating data for pre‐clinical and clinical studies in drug development, is under the regulation of local agencies as well as global organizations to ensure the data integrity and quality in submission. As major regulatory agencies and organizations, the US Food and Drug Administration, the European Medicines Agency and the International Council for Harmonization of Technical Requirements for Pharmaceuticals for Human Use have been updating their industry guidance for bioanalytical method validation, to keep up with the development new modalities, technologies and regulations. This article summarizes the recent updates and any clarifications and controversies triggered by those updates. Perspectives and recommendations are given based on our own experience as well as commonly accepted practice in the bioanalytical community.     

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Analysis of ToF‐SIMS spectra of poly(2‐vinylpyridine) and poly(4‐vinylpyridine) with density functional theory calculations

The time‐of‐flight secondary ion mass spectrometry (ToF‐SIMS) positive and negative ion spectra of poly(2‐vinylpyridine) (P2VP) and poly(4‐vinylpyridine) (P4VP) were analyzed using density functional theory calculations. Most of the ions from these structural isomers shared the same accurate mass, but had different relative abundance. This could be attributed to the fact that from a thermodynamics perspective, the disparity in the molecular structures can affect the ion stability if we assume that they shared the same mechanistic pathway of formation with similar reaction kinetics. The molecular structures of these ions were assigned, and their stability was evaluated based on calculations using the Kohn‐Sham density functional theory with Becke's 3‐parameter Lee‐Yang‐Parr exchange‐correlation functional and a correlation‐consistent, polarized, valence, double‐zeta basis set for cations and the same basis set with a triple‐zeta for anions. The computational results agreed with the experimental observations that the nitrogen‐containing cations such as C₅H₄N⁺ (m/z = 78), C₈H₇N^+· (m/z = 117), C₈H₈N⁺ (m/z = 118), C₉H₈N⁺ (m/z = 130), C₁₃H₁₁N₂⁺ (m/z = 195), C₁₄H₁₃N₂⁺ (m/z = 209), C₁₅H₁₅N₂⁺ (m/z = 223), and C₂₁H₂₂N₃⁺ (m/z = 316) ions were more favorably formed in P2VP than in P4VP due to higher ion stability because the calculated total energies of these cations were more negative when the nitrogen was situated at the ortho position. Nevertheless, our assumption was invalid in the formation of positive ions such as C₆H₇N⁺˙ (m/z = 93) and C₈H₁₀N⁺ (m/z = 120). Their formation did not necessarily depend on the ion stability. Instead, the transition state chemistry and the matrix effect both played a role. In the negative ion spectra, we found that nitrogen‐containing anions such as C₅H₄N^? (m/z = 78), C₆H₆N^? (m/z = 92), C₇H₆N^? (m/z = 104), C₈H₆N^? (m/z = 116), C₉H₁₀N^? (m/z = 132), C₁₃H₁₁N₂^? (m/z = 195), and C₁₄H₁₃N₂^? (m/z = 209) ions were more favorably formed in P4VP, which is in line with our computational results without exception. We speculate that whether anions would form from P2VP and P4VP is more dependent on the stability of the ions.     

Network model evaluation of permeability and spatial correlation in a real random sphere packing

In principle, network models can replicate exactly the microstructure of porous media. In practice, however, network models have been constructed using various assumptions concerning pore structure. This paper presents a network model of a real, disordered porous medium that invokes no assumptions regarding pore structure. The calculated permeability of the model agrees well with measured permeabilities, providing a new and more rigorous confirmation of the validity of the network approach. Several assumptions commonly used in constructing network models are found to be invalid for a random packing of equal spheres. In addition, the model permits quantification of the effect of pore-scale correlation (departure from randomness) upon permeability. The effect is comparable to reported discrepancies between measured permeabilities and predictions of other network models. The implications of this finding are twofold. First, a key assumption of several theories of transport in porous media, namely that pore dimensions are randomly distributed upon a network, may be invalid for real porous systems. Second, efforts both to model and to measure pore-scale correlations could yield more accurate predictions of permeability.     

Preparation of 2-aryl and 2-aryloxymethyl imidazo[1,2-a]pyridines and related compounds

A series of substituted 2-aryl imidazo[1,2-a]pyridines has been prepared in which a variety of substituents are introduced on the 4′-position of the phenyl ring and on the 3, 5 , 6 or 7 position of the heterocyclic ring. Most examples have acetamido, bromo, cyano, or formyl substituents at the 4′-position. Analogous imidazo-[2,1-b]fhiazoles and imidazo[1,2-a]pyrimidines have also been prepared. Another series of compounds consisting of 4′-formylphenoxymethyl derivatives of imidazole, the three positional isomers of pyridine, thiazole, benzimidazole and ring-substituted imidazo[1,2-a]pyridines has been prepared. 2-(4′-Formylphenylethenyl) derivatives of imidazole and imidazo[1,2-a]pyridine were also prepared.