Structural Comparison of Oligoribonucleotides and Their 2′-Deoxy-2′-fluoro Analogs by heteronuclear NMR spectroscopy

1-(2′-Deoxy-2′-fluororibofuranosyl)pyrimidines were synthesized and incorporated into an RNA oligonucleotide to give 5′-r[C_fGC_f(U_fU_fC_fG)GC_fG]-3′ (C_f: short form of C = 2′-deoxy-2′-fluorocytidine; U_f: short form of U = 2′-deoxy-2′-fluorouridine). The oligomer was investigated by means of UV, CD, and NMR spectroscopy to address the question of how F-labels can substitute ¹³C-labels in the ribose ring. Through-space (NOE) and through-bond (scalar couplings) experiments were performed that make use of the ameliorated chemical-shift dispersion induced by ¹⁹F as an alternative heteronucleus. A comparison of the structures of fluorinated vs. unmodified oligomer is given. It turns out that the fluorinated oligonucleotide exists in a 14:3 equilibrium between a hairpin and a duplex conformation, in contrast to the unmodified oligonucleotide which predominantly adopts the hairpin conformation. Furthermore, the fluorinated hairpin structure adopts two distinct conformations that differ in the sugar conformation of the U and C nucleoside units, as detected by the ¹⁹F-NMR chemical shifts. The role of the 2′-OH group as stabilizing element in RNA secondary structure is discussed.     

Solution and X-Ray Crystal Structures of the Di- and Tetra-allyl Ether of tert- utylcalix[4]arene

The di- and tetra-allyl ethers of tert-butylcalix[4]arene 1 and 2 have been prepared by alkylation of tert-butylcalix[4]arene with allyl bromide and K₂CO₃ using different reaction times. Solution ¹H NMR measurement of the di-allyl ether 1 and X-ray crystal structures of the complexes of 1 with chloroform (1a) or methanol (1b) indicate the cone conformation of 1 in which intramolecular hydrogen bonding can be maximized. The crystalline state conformers 1a and 1b are distorted in different grades depending on the solvent. While methanol is incorporated in the macrocycle, chloroform molecules do not occupy the cage. The solution ¹H NMR spectra of tetra-allyl ether 2 show the co-existence of the cone and partial cone conformation. The partial cone conformer of 2 was investigated by X-ray crystallography. In this compound hydrogen bonding is not existent. The conformer distribution is likely affected by steric and template effects.     

Thin-layer chromatography combined with diode laser desorption/atmospheric pressure chemical ionization mass spectrometry

The desorption of an analyte by a continuous wave diode laser from a porous surface of a thin-layer plate covered with a graphite suspension is presented. The thermally desorbed analyte molecules are ionized in the gas phase by a corona discharge at atmospheric pressure. Therefore, both essential processes--the desorption and the ionization of analyte molecules, which are often performed in one step--are separated. The target preparation is easy and fast since no additional extraction process is required. The mass spectrometric background signal was mostly limited to the low mass range showing no interference with typical compounds of interest. In this study, the calmative and antihypertensive drug reserpine was chosen as model analyte, which is often used for specification of mass spectrometers. No fragmentation was observed because of efficient collisional cooling under atmospheric pressure. The influence of diode laser power and the composition of the graphite suspension were investigated, and a primary optimization was performed.     

Simple one-step process for immobilization of biomolecules on polymer substrates based on surface-attached polymer networks

For the miniaturization of biological assays, especially for the fabrication of microarrays, immobilization of biomolecules at the surfaces of the chips is the decisive factor. Accordingly, a variety of binding techniques have been developed over the years to immobilize DNA or proteins onto such substrates. Most of them require rather complex fabrication processes and sophisticated surface chemistry. Here, a comparatively simple immobilization technique is presented, which is based on the local generation of small spots of surface attached polymer networks. Immobilization is achieved in a one-step procedure: probe molecules are mixed with a photoactive copolymer in aqueous buffer, spotted onto a solid support, and cross-linked as well as bound to the substrate during brief flood exposure to UV light. The described procedure permits spatially confined surface functionalization and allows reliable binding of biological species to conventional substrates such as glass microscope slides as well as various types of plastic substrates with comparable performance. The latter also permits immobilization on structured, thermoformed substrates resulting in an all-plastic biochip platform, which is simple and cheap and seems to be promising for a variety of microdiagnostic applications.     

A microfluidic system enabling Raman measurements of the oxygenation cycle in single optically trapped red blood cells

Using a lab-on-a-chip approach we demonstrate the possibility of selecting a single cell with certain properties and following its dynamics after an environmental stimulation in real time using Raman spectroscopy. This is accomplished by combining a micro Raman set-up with optical tweezers and a microfluidic system. The latter gives full control over the media surrounding the cell, and it consists of a pattern of channels and reservoirs defined by electron beam lithography that is moulded into rubber silicon (PDMS). Different buffers can be transported through the channels using electro-osmotic flow, while the resonance Raman response of an optically trapped red blood cell (RBC) is simultaneously registered. This makes it possible to monitor the oxygenation cycle of the cell in real time and to investigate effects like photo-induced chemistry caused by the illumination. The experimental set-up has high potential for in vivo monitoring of cellular drug response using a variety of spectroscopic probes.     

A Convenient and Selective Palladium‐Catalyzed Aerobic Oxidation of Alcohols

An efficient procedure for the oxidation of primary and secondary alcohols to aldehydes and ketones, respectively, with molecular oxygen under ambient conditions has been achieved. By applying catalytic amounts of Pd(OAc)₂ in the presence of tertiary phosphine oxides (O?PR₃) as ligands, a variety of substrates are selectively oxidized without formation of ester byproducts. Spectroscopic investigations and DFT calculations suggest stabilization of the active palladium(II) catalyst by phosphine oxide ligands.     

A new family of mixed-valence dinuclear rhodium complexes containing the two metal centers in different stereochemical environments

A series of dinuclear chelate complexes of the general composition [Rh2(kappa2-L)2(mu-CR2)2(mu-SbiPr3)] (R = Ph, p-Tol; L = CF3CO2-, acac-, acac-f3-) and [Rh2Cl(kappa2-L)(mu-CR2)2(mu-SbiPr3)] (R = Ph, p-Tol; L = acac-, acac-f3-) has been prepared by replacement of the chloro ligands in the precursors [Rh2Cl2(mu-CR2)2(mu-SbiPr3)] by anionic chelates. The lability of the SbiPr3 bridge in the rhodium dimers is illustrated by the reactions of [Rh2(kappa2-acac)2(mu-CR2)2(mu-SbiPr3)] (7, 8) with Lewis bases such as CO, CNtBu, and SbEt3 which lead to the formation of the substitution products [Rh2(kappa2-acac)2(mu-CR2)2(mu-L')] (13-16) in excellent yields. Treatment of 7 and 8 with sterically demanding tertiary phosphanes PR3 (R3 = iPr3, iPr2Ph, iPrPh2, Ph3) affords the mixed-valence Rh0-RhII complexes [(kappa2-acac)2Rh(mu-CPh2)2Rh(PR3)] (21-24) and [(kappa2-acac)2Rh(mu-C(p-Tol)2]2Rh(PiPr3)] (25) for which there is no precedence. The terminal PiPr3 ligand of 21 is easily displaced by alkynes, CNtBu, and CO to give, by preserving the [(kappa2-acac)2Rh(mu-CPh2)2Rh] molecular core, the related dinuclear compounds 26-31 in which the coordination number of the Rh0 center is 3, 4, or 5. The molecular structures of [Rh2Cl(kappa2-acac)(mu-CPh2)2(mu-SbiPr3)] (5), [Rh2(kappa2-acac)2(mu-CPh2)2(mu-CO)] (13), [(kappa2-acac)2Rh(mu-CPh2)2Rh(PiPr3)] (21), and [(kappa2-acac)2Rh(mu-CPh2)2Rh(CNtBu)2] (30) have been determined crystallographically.