Structures and mechanisms in chemical reactions: George A. Olah’s life-long search of chemistry

The Hungarian-born American chemistry Nobel laureate George A. Olah used superacids to give longer life to carbocations. He resolved a long-standing debate on reaction mechanism in organic chemistry and, more importantly, opened new vistas in hydrocarbon chemistry to produce hosts of new compounds. The concerted utilization of organic synthesis, physical techniques, and computational methods led to spectacular achievements in hydrocarbon chemistry. Olah has always been on the lookout for the practical applications of his discoveries in fundamental chemistry. He continued his research after his Nobel award and has worked out the idea, which he labeled “the methanol economy.” Olah’s example shows that a great researcher can also be a devoted and caring human being.     

Field-induced π-polarization in barrelene derivatives: a computational study based on structural variation

Barrelene, H–C(CH=CH)₃C–H, is an unsaturated polycyclic hydrocarbon containing three isolated double bonds in a non-planar arrangement. We have studied the transmission of field effects through the barrelene framework by analyzing the small structural changes occurring in the phenyl group of many Ph–C(CH=CH)₃C–X molecules, where X is a variable substituent. Molecular geometries have been determined by quantum chemical calculations at the HF/6-31G* and B3LYP/6-311++G** levels of theory. Comparison with the results obtained for the corresponding saturated molecules, the bicyclo[2.2.2]octane derivatives Ph–C(CH₂–CH₂)₃C–X, reveals a small, but significant, field-induced π-polarization of the barrelene cage, especially when the remote substituent is a charged group. Additional evidence of π-polarization is obtained by comparing the electric dipole moments of the two sets of uncharged molecules. The structural variation of the barrelene cage caused by the variable substituent in Ph–C(CH=CH)₃C–X molecules has also been investigated. It is much larger than that of the phenyl group and depends primarily on the electronegativity of the substituent. Particularly pronounced is the concerted variation of the non-bonded distance between the bridgehead carbons of the cage, r(C···C) ₁ ^BARR , and the average of the three C–C–C angles at the cage carbon bonded to the variable substituent, α ₁ ^BARR . A scattergram of r(C···C) ₁ ^BARR versus the corresponding parameter for bicyclo[2.2.2]octane derivatives, r(C···C) ₁ ^BCO , shows that the variation of r(C···C) ₁ ^BARR becomes gradually less pronounced than that of r(C···C) ₁ ^BCO as the electronegativity of the substituent increases.     

How weak an acid can be? Variations of H-bond and/or <Emphasis Type="Italic">van der Waals</Emphasis> Interaction of Weak Acids

Complex formation ability and stability of both weak and super-weak acids was studied by mean of in silico determined thermodynamic data of the complexes. While weak acids act like Brønsted acids forming hydrogen bond type Brønsted complexes, super-weak acids form Lewis complexes via van der Waals interaction. Unlike in the former type, upon complexation, C-H distances changes insignificantly, yet the complex formation is energy driven in the terms of zero-point corrected Energies, ΔE _zp  < 0 kcal mol^?1, which supports the Lewis complex formation, with the exception of CH₄, an extremely “weak acid”.

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Graphical abstract Selected NBOs of the complexes formed between NC-CH₂-H (Lewis acid) with dioxolane as well as NC-O-H (Brønsted acid) and dioxolane.

     

Effect of halogen bonding on supramolecular assembly and photophysical properties of diaryl oxalates

In order to determine the effect of halogen bonding on supramolecular assemblies and photophysical properties of diaryl oxalates, diaryl oxalate itself and its derivatives with fluorine, chlorine, bromine, and iodine substituents in the p-position of phenyl rings were studied and compared. Their single-crystal structures were studied by geometrical analysis and theoretical calculation. The study reveals that different halogen bonds are formed with respect to different halogen atoms, such as C…F and X…X (bromine and iodine atoms) interactions, and molecular stacking modes would be affected by halogen bonds directly. Comparative studies of photophysical properties in dilute solution and solid state indicate that halogen substitutions would not affect the emission processes of diaryl oxalates in dilute solution; this is not the case for their solid state. This work has demonstrated that halogen bonds play an important role in regulating structures and photophysical properties of diaryl oxalates.     

A silica-supported palladium-bis(oxazoline) complex efficiently catalyzes the synthesis of cinnamic acid derivatives via Mizoroki–Heck coupling reactions

A palladium(II)-bis(oxazoline) complex supported on silica (Pd-BOX-Si) was prepared, characterized and applied as a catalyst in Mizoroki–Heck cross-coupling reactions. The bis(oxazoline) (BOX) ligand has a hydroxyl group that can be anchored to 4-benzyl chloride-functionalized silica gel, followed by the coordination of palladium(II) chloride. The catalytic activity and the recyclability of Pd-BOX-Si have been investigated in the production of cinnamic acid derivatives via Mizoroki–Heck coupling reactions of acrylates with aryl halides; The Pd-BOX-Si catalyst demonstrated excellent catalytic activity. Characterization of the recycled Pd-BOX-Si catalyst revealed its good stability under the reaction conditions employed.     

Synthesis,crystal structures and catalytic epoxidation properties of dioxomolybdenum(VI) complexes with hydrazone ligands

A series of dioxomolybdenum(VI) complexes with similar hydrazone ligands have been prepared, specifically [MoO₂L¹(MeOH)] (1), [MoO₂L²(MeOH)] (2) and [MoO₂L³(MeOH)] (3), where L¹, L² and L³ are the dianionic forms of 2-chloro-N′-(2-hydroxybenzylidene)benzohydrazide, 2-chloro-N′-(2-hydroxy-5-methylbenzylidene)benzohydrazide and N′-(3-bromo-5-chloro-2-hydroxybenzylidene)-2-chlorobenzohydrazide, respectively. The complexes were characterized by physicochemical and spectroscopic methods and also by single-crystal X-ray determination. The hydrazone ligands coordinate to the Mo atoms through their phenolate O, imine N and enolic O atoms. The Mo atoms are six-coordinated in octahedral geometries. The complexes show high catalytic activities and selectivities in the epoxidation of cyclohexene with tert-butylhydroperoxide as primary oxidant.     

Syntheses and photocatalytic performances of four coordination complexes constructed from 1,10-phenanthroline and polycarboxylic acids

Four coordination complexes of copper(II) and iron(II), namely [CuCl(phen)₂](5-NO₂-Hipa)·2H₂O (BUC-10), [Cu(phen)(3,4-H₂dczpb)(H₂O)]·H₂O (BUC-11), [Fe(phen)(L)(H₂O)]₂ (BUC-12), and [Fe(phen)₃](3,4-H₃dczpb)₂·0.6H₂O (BUC-13) (phen = 1,10-phenanthroline; 5-NO₂-H₂ipa = 5-nitroisophthalic acid; 3,4-H₄dczpb = 3,4-dicarboxyl-(3′,4′-dicarboxylazophenyl) benzene; L = 6,12-dihydroxy-1,2,6,12-tetrahydroindazolo[2,1-a]indazole-1,7-dicarboxylic acid), have been synthesized under hydrothermal conditions. All four complexes were characterized by single-crystal X-ray diffraction, FTIR, elemental analysis and UV–Vis diffuse reflection spectroscopy. The photocatalytic performances of the complexes for decomposition of methylene blue under UV irradiation were also investigated.     

Synthesis,characterization and antitumor activity of palladium(II) complexes of imidazolidine-2-thione

Complexes of the type cis-[PdX₂(imzt)(PPh₃)] {imzt = imidazolidine-2-thione; PPh₃ = triphenylphosphine; X = Cl (1), Br (2), I (3), SCN (4)} have been synthesized and characterized by elemental analyses, molar conductance, IR and ¹H NMR spectroscopies. The complex 1·MeOH was obtained from the reaction of [PdCl₂(CH₃CN)₂], imidazolidine-2-thione and triphenylphosphine in CHCl₃/CH₃OH. Complexes 2·MeOH, 3 and 4 were prepared by metathesis of the chlorido ligands in 1 with bromide, iodide and thiocyanate, respectively. Elemental analyses showed good agreement with the expected mononuclear compositions, while the molar conductivities of the complexes in DMF were consistent with their nonelectrolytic nature. NMR spectra confirmed coordination of the imidazolidine-2-thione and triphenylphosphine ligands. Single-crystal X-ray diffraction determination of 1·CH₃OH showed that the coordination geometry around Pd^II is nearly square planar, with the chlorido ligands in a cis configuration. All four complexes have been tested in vitro by XTT assay for their cytotoxicity against human glioblastoma cell line (U87MG). The binding of 1 with guanosine was studied by ¹H NMR spectroscopy, revealing that the coordination takes place via N7.     

Biosynthetic approach to modeling and understanding metalloproteins using unnatural amino acids

Metalloproteins have inspired chemists for many years to synthesize artificial catalysts that mimic native enzymes.As a complementary approach to studying native enzymes or making synthetic models,biosynthetic approach using small and stable proteins to model native enzymes has offered advantages of incorporating non-covalent secondary sphere interactions under physiological conditions.However,most biosynthetic models are restricted to natural amino acids.To overcome this limitation,incorporating unnatural amino acids into the biosynthetic models has shown promises.In this review,we summarize first synthetic,semisynthetic and biological methods of incorporates unnatural amino acids(UAAs)into proteins,followed by progress made in incorporating UAAs into both native metalloproteins and their biosynthetic models to fine-tune functional properties beyond native enzymes or their variants containing natural amino acids,such as reduction potentials of azurin,O_2 reduction rates and percentages of product formation of HCO models in Mb,the rate of radical transport in ribonucleotide reductase(RNR)and the proton and electron transfer pathways in photosystemⅡ(PSⅡ).We also discuss how this endeavour has allowed systematic investigations of precise roles of conserved residues in metalloproteins,such as Metl21 in azurin,Tyr244 that is cross-linked to one of the three His ligands to CuB in HCO,Tyr122,356,730 and 731 in RNR and TyrZ in PSⅡ.These examples have demonstrated that incorporating UAAs has provided a new dimension in our efforts to mimic native enzymes and in providing deeper insights into structural features responsible high enzymatic activity and reaction mechanisms,making it possible to design highly efficient artificial catalysts with similar or even higher activity than native enzymes.     

Recent advances in the preparation of Fmoc-SPPS-based peptide thioester and its surrogates for NCL-type reactions

Solid phase peptide synthesis (SPPS) based on Fmoc chemistry has become a commonly used technique in peptide chemistry, as it can be easily conducted using automated machine, and not requiring highly toxic HF in comparison to Boc-SPPS. With the fast development in the emerging field of protein chemical synthesis, many efforts have been endeavored aiming to find more efficient methods for preparing peptide fragments required in ligation reactions. This review briefly summarizes recent advances in the engineering and modification of Fmoc-SPPS-derived peptides, which can be used as the N-terminal fragments in a native chemical ligation (NCL) or NCL-type ligation reactions.