Interplay of Interactions Governing the Dynamic Conversions of Acyclic and Macrocyclic Helicates

Systemic change : A system of transformations between helical structures was observed to be governed by interactions mediated by the electronic effects of substituents, entropic effects, the conformational preferences of organic building blocks, and the coordinative preferences of the metal ion. All of these effects were important, but all must be considered together to allow the prediction of the product observed (see scheme).

     

Energetic preference of 8-oxoG eversion pathways in a DNA glycosylase

Base eversion is a fundamental process in the biochemistry of nucleic acids, allowing proteins engaged in DNA repair and epigenetic modifications to access target bases in DNA. Crystal structures reveal end points of these processes, but not the pathways involved in the dynamic process of base recognition. To elucidate the pathway taken by 8-oxoguanine during base excision repair by Fpg, we calculated free energy surfaces during eversion of the damaged base through the major and minor grooves. The minor groove pathway and free energy barrier (6-7 kcal/mol) are consistent with previously reported results (Qi, Y.; Spong, M. C.; Nam, K.; Banerjee, A.; Jiralerspong, S.; Karplus, M.; Verdine, G. L. Nature 2009, 462, 762.) However, eversion of 8-oxoG through the major groove encounters a significantly lower barrier (3-4 kcal/mol) more consistent with experimentally determined rates of enzymatic sliding during lesion search (Blainey, P. C.; van Oijent, A. M.; Banerjee, A.; Verdine, G. L.; Xie, X. S. Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 5752.). Major groove eversion has been suggested for other glycosylases, suggesting that in addition to function, dynamics of base eversion may also be conserved.     

Sodium congener of the classical lithium methylchromate dimer: synthetic, X-ray crystallographic, and magnetic studies of Me8Cr2[Na(OEt2)]4

One of the milestone structures in the development of transition-metal complexes with metal-metal bonds of multiple bond order was the lithium methylchromate dimer Me(8)Cr(2)[Li(donor)](4) (donor = THF or Et(2)O). Using a simple salt metathesis reaction mixing this compound with sodium tert-butoxide, the sodium congener Me(8)Cr(2)[Na(OEt(2))](4) has been synthesized as a green crystalline compound and isolated in 51% yield. Its solid-state structure was determined by single-crystal X-ray diffraction. Exhibiting exact crystallographic C(4h) symmetry, this heavier alkali-metal chromate structure is also dimeric, formally comprising a (Me(8)Cr(4))(4-) tetranionic core with four peripheral Na(+) cations carrying supporting ether ligands. Its salient feature is the long Cr···Cr distance of 3.263(2) ?, which is remarkably elongated compared to that in the lithium THF-solvated congener [1.968(2) ?]. With respect to the methyl C atoms, the Cr coordination is distorted-square-planar. Each Na(+) interacts with four methyl C atoms, and there are also some short Na···H(C) contacts. Unlike for lithium chromate, no NMR spectroscopic data could be obtained for sodium chromate. The paramagnetic character of sodium chromate was confirmed by variable-temperature magnetization measurements, which indicated antiferromagnetic behavior.     

Rate constants for reactions of hydroxyl radicals with nitromethane and methyl nitrite vapours at 292 K

The variations of yields of CO₂ from the gas phase H₂O₂ + NO₂ + CO chain reaction system with added nitromethane or methyl nitrite have given rate constants for reactions of OH radicals with these substrates. At 292 K these are (5.5 ± 0.6) × 10⁸ and (8.0 ± 1.1) × 10⁸ dm³ mol^?1 s^?1 respectively.     

Mass spectra of some sulphonyl azides

A series of sulphonyl azides decomposed upon electron-impact with loss of azide radical. This fragmentation was in marked contrast to the photochemical behaviour of the compounds. An interesting ortho-extrusion process occurred in the mass spectrum of 2,4,6-triisopropylbenzenesulphonyl azide.     

Apolar 2‐alkoxyalkoxy‐substituted nematic liquid crystals

The synthesis is reported of a series of apolar nematic liquid crystals incorporating an alkoxyalkoxy chain attached in a terminal position to the molecular core. The dependence of the mesomorphism and phase transition temperatures on the nature of the terminal chain with one, two or three oxygen atoms was studied. Some compounds with a completely alicyclic molecular core and a terminal 2‐methoxyethoxy chain exhibit a nematic phase with a low melting point, birefringence and viscosity and a relatively high clearing point in the absence of smectic phases. They do not to absorb light in the near UV and may be useful as components of UV‐stable nematic mixtures for use in photoluminescent liquid crystal displays. The presence of the methoxyethoxy chain leads to a relatively large dipole moment perpendicular to the molecular long axis.     

Highly sensitive non‐isotopic restriction endonuclease fingerprinting of nucleotide variability in the gp60 gene within Cryptosporidium species,genotypes and subgenotypes infective to humans,and its implications

The high‐resolution analysis of genetic variation has major implications for the identification of parasites and micro‐organisms to species and subspecies as well as for population genetic and epidemiological studies. In this study, we critically assessed the effectiveness of a PCR‐based restriction endonuclease fingerprinting (REF) method for the detection of mutations in the 60 kDa glycoprotein gene (gp60) of Cryptosporidium, a genus of parasitic protists of major human and animal health importance globally. This gene displays substantial intraspecific variability in sequence, particularly in a TCA (perfect and imperfect) microsatellite region, is present as a single copy in the nuclear genome and is used widely as a marker in molecular epidemiological studies of Cryptosporidium hominis and C. parvum, the two predominant species that infect humans. The results of this study demonstrated an exquisite capacity of REF to detect nucleotide variability in the gp60 gene within each of the two species. The differentiation of genotypes/subgenotypes based on REF analysis was supported by targeted sequencing, allowing the detection of levels of variation as low as a single‐nucleotide transversion for amplicons of ∼1 kb in size. The high‐throughput potential and relatively low‐cost of REF make it a particularly useful tool for large‐scale genetic analyses of C. hominis and C. parvum. REF could also be utilized for comparative surveys of genetic variability across large nuclear genomic regions. Such analyses of Cryptosporidium in clinical and environmental samples by REF have important implications for identifying sources of infection, modes of transmission and/or possible infectivity to humans, thus assisting in the surveillance and control of cryptosporidiosis. Given its excellent mutation detection capacity, REF should find broad applicability to various single‐copy genes as well as a wide range of other protozoan and metazoan parasites. (The nucleotide sequences reported in this article are available in the GenBank database under accession numbers GU214343–GU214371).     

Short-team stability of trace metals in estuarine water samples

The short-term (up to 24 h) stability of estuarine water with high (22%?) and low (<21%?) salinity, stored unacidified in polythene containers prior to filtration, preservation and determination of dissolved trace metals, was assessed. For the-salinity sample a massive (140%) increase in copper concentration was observed, indicating desorption from the particulate phase; a similar, although less pronounced (11%) effect was found for the high-salinity sample, Evidence was also obtained for a significant loss (30%) of lead from a pre-filtered low-salinity sample, suggesting appreciable adsorption to the container walls. For cadmium and nickel, no substantial changes in concentration were observed.     

Kinetics of vesicle formation

 The kinetics of vesicle formation from a hydrotrope (sodium xylenesulfonate) solution of a surfactant (Laureth 4) is studied by the use of a stopped-flow apparatus combined with a dynamic light scattering device to determine vesicle size in the system. The hydrotrope system studied presents a system with a high surfactant solubilization combined with vesicle formation simply by dilution with water. The kinetic results show a single exponential decay time. The kinetic analysis indicates that the vesicles are formed from a molecular solution which resulted from the shear in the stopped-flow device and grow by monomeric association. Received: 1 October 1996 Accepted: 22 November 1996