Far downstream analysis for the Blasius boundary-layer stability problem

In this paper, we examine the large Reynolds number (Re) asymptoticstructure of the wave number in the Orr–Sommerfeld regionfor the Blasius boundary layer on a semi-infinite flat plategiven by Goldstein (1983, J. Fluid Mech., 127, 59–81).We show that the inclusion of the term which contains the leading-ordernon-parallel effects, at O(Re^{– 1/2}), leads to a non-uniformexpansion. By considering the far downstream form of each termin the asymptotic expansion, we derive a length scale at whichthe non-uniformity appears, and compare this position with theposition seen in plots of the wave number.     

New Results of Studying the Lower Ionosphere by the Method of Resonance Scattering of Radio Waves from Artificial Periodic Inhomogeneities

We present the results of studying the lower ionosphere in 2000–2004 at the “Sura” heating facility by the method of resonance scattering of radio waves from artificial periodic inhomogeneities of the ionospheric plasma. Experimental data on a study of the sunset–sunrise phenomena in the ionospheric D region and the possibility of determining the concentrations of atomic oxygen and excited molecular oxygen are discussed. The results of studying the sporadic layers of ionization are presented and the method for a study of ion composition of the E_s layer is discussed. Data of the August 2004 experiments on a study of the influence of heating the ionosphere on the E_s layer and characteristics of artificial periodic inhomogeneities are presented. Prospects for further research are discussed. __________ Translated from Izvestiya Vysshikh Uchebnykh Zavedenii, Radiofizika, Vol. 48, No. 9, pp. 757–771, September 2005.     

Observations of plasma line splitting in the ionospheric incoherent scatter spectrum

Wide-bandwidth ionospheric incoherent scatter (IS) spectra obtained using the Arecibo IS radar show the occurrence of a split in the plasma line (i.e., two plasma lines) when the plasma frequency is close to the second harmonic of the electron gyrofrequency. This split is predicted in the IS theory for a magnetized plasma, but observations have never been reported. Here we present the experimental results and theoretical calculations supporting the observations. These results may assist in understanding the behavior of Langmuir waves in the magnetized plasma and are a validation of what historically was a somewhat controversial aspect of the IS theory.     

Compressed sensing for resolution enhancement of hyperpolarized 13C flyback 3D-MRSI

High polarization of nuclear spins in liquid state through dynamic nuclear polarization has enabled the direct monitoring of 13C metabolites in vivo at very high signal-to-noise, allowing for rapid assessment of tissue metabolism. The abundant SNR afforded by this hyperpolarization technique makes high-resolution 13C 3D-MRSI feasible. However, the number of phase encodes that can be fit into the short acquisition time for hyperpolarized imaging limits spatial coverage and resolution. To take advantage of the high SNR available from hyperpolarization, we have applied compressed sensing to achieve a factor of 2 enhancement in spatial resolution without increasing acquisition time or decreasing coverage. In this paper, the design and testing of compressed sensing suited for a flyback 13C 3D-MRSI sequence are presented. The key to this design was the undersampling of spectral k-space using a novel blipped scheme, thus taking advantage of the considerable sparsity in typical hyperpolarized 13C spectra. Phantom tests validated the accuracy of the compressed sensing approach and initial mouse experiments demonstrated in vivo feasibility.     

Selective Engineering of Linkage‐Specific α2,6‐N‐Linked Sialoproteins Using Sydnone‐Modified Sialic Acid Bioorthogonal Reporters

The metabolic oligosaccharide engineering (MOE) strategy using unnatural sialic acids has recently enabled the visualization of the sialome in living systems. However, MOE only reports on global sialylation and dissected information regarding subsets of sialosides is missing. Described here is the synthesis and utilization of sialic acids modified with a sydnone reporter for the metabolic labeling of sialoconjugates. The positioning of the reporter on the sugar significantly altered its metabolic fate. Further in vitro enzymatic assays revealed that the 9‐modified neuraminic acid is preferentially accepted by the sialyltransferase ST6Gal‐I over ST3Gal‐IV, leading to the favored incorporation of the reporter into linkage‐specific α2,6‐N‐linked sialoproteins. This sydnone sugar presents the possibility of investigating the roles of specific sialosides.     

Versatile solid-phase synthesis of trisubstituted 1H-pyrido[2,3-d]pyrimidin-4-ones and related heterocycles

A solid-phase synthesis of trisubstituted 1H-pyrido[2,3-d]pyrimidin-4-ones has been developed. The synthesis utilizes solid-phase bound N-2,6-dichloronicotinoyl-1H-benzotriazole-1-carboximidamides as key intermediates. Sequential substitution of benzotriazole and the two chlorines furnishes the title compounds with regioselectivity and high purity. Application of the method to various disubstituted analogues is also demonstrated.     

Synthesis, characterization, and cellular uptake of DNA-binding rose bengal peptidoconjugates

Peptide conjugates of the xanthene dye rose bengal (RB) are described featuring sequences that promote DNA binding. The complexation of these conjugates with DNA causes efficient quenching of the fluorophore singlet state and suppresses singlet oxygen production. When incubated with human cells, the RB conjugates pass through the cell membrane but are not visualized in the nucleus. This behavior is in stark contrast to that exhibited by structurally analogous conjugates containing the unhalogenated xanthene dye fluorescein. These results highlight the marked sensitivity of cell permeability characteristics to subtle structural differences.     

A flexible data analysis tool for chemical genetic screens

High-throughput assays generate immense quantities of data that require sophisticated data analysis tools. We have created a freely available software tool, SLIMS (Small Laboratory Information Management System), for chemical genetics which facilitates the collection and analysis of large-scale chemical screening data. Compound structures, physical locations, and raw data can be loaded into SLIMS. Raw data from high-throughput assays are normalized using flexible analysis protocols, and systematic spatial errors are automatically identified and corrected. Various computational analyses are performed on tested compounds, and dilution-series data are processed using standard or user-defined algorithms. Finally, published literature associated with active compounds is automatically retrieved from Medline and processed to yield potential mechanisms of actions. SLIMS provides a framework for analyzing high-throughput assay data both as a laboratory information management system and as a platform for experimental analysis.