The use of enzymes for construction of DNA-based objects and assemblies

DNA has found wide applications in DNA-based nanotechnology due to its simplicity and predictability of its secondary structure. Selecting DNA for the nanoconstruction of objects and assemblies bears the inherent potential for manipulations and control by DNA modifying enzymes. In this tutorial review, we present an overview of the enzyme-catalysed construction of DNA-based objects and assemblies. It is illustrated how a diversity of enzyme-based biochemical reactions are transferred in nanotechnological applications.     

Concerted and stepwise proton-coupled electron transfers in aquo/hydroxo complex couples in water: oxidative electrochemistry of [Os(II)(bpy)(2)(py)(OH(2))](2+)

Successive oxidation of transition metal(II) aqua complexes (M(II)OH(2) to M(III)OH) is a domain in which proton-coupled electron transfer reactions are extremely common. The mechanism of these PCET reactions-concerted or stepwise-is an important issue in the understanding and design of natural or artificial systems catalyzing the formation of dioxygen by four-electron oxidation of water. Concerted proton-coupled electron transfer from an aqua metal(II) to a hydroxo metal(III) complex requires the close proximity of a proton-accepting group with a pK value between those of the aqua complexes. Otherwise, stepwise electron-proton or proton-electron pathways involving high-energy intermediates are followed. Concerted proton-electron pathways involving water as proton-acceptor or proton-donor group are inefficient. Cyclic voltammetry of the title complex in buffered aqueous solution and re-examination of previous results for the same complex attached to an electrode surface are used to establish these conclusions, which provide a starting point on the route to higher degrees of oxidation, such as those involved in the catalysis of water oxidation.     

Comparison of five extraction methods for measuring PCBs,PBDEs, organochlorine pesticides,and lipid content in serum

An increasing number of studies use blood obtained noninvasively to monitor organohalogen contaminants; however, blood can be difficult to analyze because of its aqueous nature and high protein content. We compared five methods for extracting polychlorinated biphenyls (PCBs), polybrominated diphenyl ethers (PBDEs), organochlorine pesticides, and lipids from serum using National Institute of Standards and Technology Standard Reference Material 1589a PCBs, Pesticides, PBDEs, and Dioxins/Furans in Human Serum. Liquid:liquid (LLE), cavity-dispersed microwave-assisted (MAE), focused microwave-assisted (FME), solid-phase (SPE), and pressurized fluid (PFE) extraction techniques were compared. FME extraction yielded the optimal recovery of internal standards (IS). All methods resulted in similar contaminant concentrations that also agreed with the certified values for SRM 1589a, except for only a few compounds measured by methods other than FME. Based on these findings, the FME method was determined to be the best overall extraction method. One procedural factor was found to affect contaminant concentrations; use of IS carrier solvents that were immiscible with serum (or when the serum was not directly physically mixed with IS) resulted in a 30% underestimation of organohalogen concentrations. This study offers valid, novel extraction alternatives beyond traditional methods (e.g., LLE) for blood contaminant measurements. Figure       

Bei der Analyse des Kobellits von Ouray, Colorado

Ohne Zusammenfassung     

Crystal and molecular structures of several tetrakis (nitrile)copper(I) complexes

The crystal structures of several [Cu(RCN)₄]X salts (R = Me, X = SO₃CF₃ ^–; R = Ph, X = BF₄ ^–, ClO₄ ^–, and PF₆ ^–) were determined using single crystal X-ray diffraction. All of the compounds contain distorted tetrahedral Cu(I) centers and noncoordinating anions, with the acetonitrile and benzonitrile structures containing three and one unique CuL₄ ⁺ complex in their respective asymmetric units. One important distortion is observed in the benzonitrile-Cu bonds, which are bent up to 23° away from linearity. The result is a flattened complex that maximizes the – tacking of the aromatic rings and is the dominant packing interactions between the complexes.     

Structures of two sterically crowded molecular propeller systems

The crystal structures of two molecular propellers are described. Enol phosphate 1 is triclinic P 1¯ with a = 10.1110(4), b = 12.0647(6), c = 14.2112(7) Å; = 96.421(3), = 98.633(3), = 108.594(2)° and Z = 2. Enol phosphinate 2 is monoclinic P2₁/n with a = 13.527(3), b = 11.980(2), c = 17.326(3) Å, = 98.616(9),° and Z = 4. Data from dynamic NMR investigations are in agreement with the size of the aryl torsion angles in the two enol propellers.     

Surface Functionalization of Micro Mechanical Cantilever Sensors by Organic Capped TiO2 and Fe2O3 Nanocrystals

A convenient and rapid procedure has been achieved to immobilize densely packed nanoporous 3D arrays of oleic acid (OLEA)-capped rod-shaped TiO₂ nanocrystals (NCs) and nearly spherical Fe₂O₃ NCs on the surface of micro mechanical cantilever sensors on SU-8. The NCs have been immobilized at room temperature and in the dark on the micro cantilevers before their release. AFM, SEM and XPS investigations attest for an effective and attachment of the NCs on the SU-8 which occurs with not modifying the original morphology and chemical composition of the nano-objects allowing for an effective accomplishment of the cantilever fabrication.     

Dilute acid hydrolysis of softwoods

Whole tree chips obtained from softwood forest thinnings were converted to ethanol via a two-stage dilute acid hydrolysis followed by yeast fermentation. The chips were first impregnated with dilute sulfuric acid, then pretreated in a steam explosion reactor to hydrolyze, more than 90% of the hemicellulose and approx 10% of the cellulose. The hydrolysate was filtered and washed with water to recover the sugars. The washed fibers were then subjected to a second acid im pregnation and hydrolysis to hydrolyze as much as 45% of the reamining cellulose. The liquors from both hydrolysates were combined and fermented to ethanol by a Saccharomyces cerevisiae yeast that had been adapted to the inhibitors. Based on available hexose sugars, ethanol yields varied from 74 to 89% of theoretical. Oligosaccharide contents higher than about 10% of the total available sugar appear to have a negative impact on ethanol yield.     

Univalent Gallium and Indium Phosphane Complexes: From Pyramidal M(PPh3)3+ to Carbene‐Analogous Bent M(PtBu3)2+ (M=Ga,In) Complexes

In a new oxidative route, Ag⁺[Al(OR^F)₄]^? (R^F=C(CF₃)₃) and metallic indium were sonicated in aromatic solvents, such as fluorobenzene (PhF), to give a precipitate of silver metal and highly soluble [In(PhF)_n]⁺ salts (n=2, 3) with the weakly coordinating [Al(OR^F)₄]^? anion in quantitative yield. The In⁺ salt and the known analogous Ga⁺[Al(OR^F)₄]^? were used to synthesize a series of homoleptic PR₃ phosphane complexes [M(PR₃)_n]⁺, that is, the weakly PPh₃‐bridged [(Ph₃P)₃In–(PPh₃)–In(PPh₃)₃]²⁺ that essentially contains two independent [In(PPh₃)₃]⁺ cations or, with increasing bulk of the phosphane, the carbene‐analogous [M(PtBu₃)₂]⁺ (M=Ga, In) cations. The M^I? P distances are 27 to 29 pm longer for indium, and thus considerably longer than the difference between their tabulated radii (18 pm). The structure, formation, and frontier orbitals of these complexes were investigated by calculations at the BP86/SV(P), B3LYP/def2‐TZVPP, MP2/def2‐TZVPP, and SCS‐MP2/def2‐TZVPP levels.