Completely hydrogen-bonded interpenetrating networks in low-temperature liquid water: Their geometrical possibility and stability

A random tetrahedral network built around linked eight-member rings is denser than an open one described earlier, and has neighbors near in space that are remoter in bond topology. The properties of amorphous ice and liquid water below 0°C correlate with a glass transition in an open network at ≈ 140 K, while linked rings, which increase enthalpy and density, only appear above about ?40°C.     

On the relationship between the nonlinear dielectric properties and respiratory activity of the obligately aerobic bacterium Micrococcus luteus

We have recently described the construction of a dual-cell, nonlinear dielectric spectrometer, and its application to the study of cell suspensions of S. cerevisiae (A.M. Woodward and D.B. Kell, Bioelectrochem. Bioenerg., 24 (1990) 83). Substantial, odd harmonics were generated by these cells when stimulated by very modest sinusoidal electrical fields, within fairly sharp voltage- and frequency windows (ca. 0.8–2.5 V cm⁻¹, 1–50 Hz). Resting cells were found to generate only odd-numbered harmonics. In the present work, we have simultaneously applied two sinusoidal frequencies which were individually of unsuitable frequency and/or amplitude for the generation of harmonics when applied to suspensions of S. cerevisiae. Strong “sidebands” or “beat frequencies” were observed which were the (odd-numbered) sums and differences of the exciting frequencies (viz. ƒ₁±2ƒ₂, ƒ₂±2ƒ₁). The generation of these beat frequencies was strongly inhibited by low concentrations of sodium metavanadate, suggesting that they may be ascribed largely to the H⁺-ATPase present in the plasma membranes of these cells. We show that the ability of dc fields to inhibit the manifestation of nonlinear dielectric behaviour by these cells is explicable in terms of their ability to act as a field of zero Hz, forcing the excitation out of the amplitude window. When the cells were allowed to glycolyse, beat frequencies of even order (ƒ₁±ƒ₂, ƒ₁±3ƒ₂) were observed. The present approach provides a novel and powerful approach to the registration of nonlinear dielectric spectra, which, due to the greater precision inherent in the discrimination of frequencies rather than voltages may be expected to provide a more sensitive means of detecting nonlinear dielectric properties in biological systems. If the transduction of exogenous electrical field energy recorded by this method is representative of the natural turnover of the H⁺-ATPase in vivo, it may be calculated that the efficiency of the capture of electric field energy by this enzyme is some 3%.     

Flow-injection electrospray ionization mass spectrometry of crude cell extracts for high-throughput bacterial identification

Flow-injection electrospray ionization mass spectrometry (FI-ESI-MS) of unfractionated cell-free extracts obtained from bacterial cells suspended in a solvent mixture was investigated as a rapid analytical method for reproducible, high-throughput bacterial identification. Five bacterial strains (two Escherichia coli, two Bacillus spp. and one Brevibacillus laterosporus) were studied in this investigation. Axenically grown bacterial cells were suspended in an acidic organic solvent and the cell-free extract was sequentially injected into a solvent flow stream that was sprayed into the ionization chamber of the ESI-MS. The spectra produced contained reproducible information, which was useful for discriminating between the bacteria. Tandem mass spectrometry was used to characterize further the peaks, and at least three classes of macromolecules, namely phospholipids, glycolipids, and proteins, were found to contribute most to the spectral information. Bacterial extracts stored under different conditions gave very similar mass spectra for each of the five bacterial strains, indicating that the extracts were stable even at room temperature for up to 24 h, with no loss of information content, which has obvious implications for automated high-throughput analysis. An analysis of the components of the extracting solvent mixture and their effects on the spectral information showed that acetonitrile contributes most significantly to the extraction process and hence to the information content of the spectra.     

Riboflavin and UV-Light Based Pathogen Reduction: Extent and Consequence of DNA Damage at the Molecular Level

We are developing a technology based on the combined application of riboflavin (RB) and light for inactivating pathogens in blood products while retaining the biological functions of the treated cells and proteins. Virus and bacteria reduction measured by tissue culture infectivity or colony formation with UV light alone and in combination with RB yield equivalent results. The effects of RB as a sensitizing agent on DNA in white cells, bacteria and viruses in combination with UV light exposure have been evaluated. UV-mediated DNA degradation in Jurkat T cells and leukocytes in plasma as measured by the FlowTACS assay was significantly increased in the presence of RB. Agarose gel electrophoretic analysis of DNA in Escherichia coli and leukocytes in plasma demonstrated enhanced DNA degradation in the presence of RB. UV light in combination with RB prevented the reactivation of lambda phage compared with samples irradiated in the absence of RB. UV-mediated oxidative damage in calf thymus DNA was also enhanced in the presence of RB. These observations clearly demonstrate that the presence of RB and UV light selectively enhances damage to the guanine bases in DNA. These data also suggest that the type and extent of damage to DNA for virus in the presence of RB and light make it less likely to be repaired by normal repair pathways available in host cells.     

Fourth-order MB-RSPT calculations of the spectroscopic constants and potential energy curve of F2

The spectroscopic constants and the potential energy curve of F₂ were calculated, using the fourth-order MB-RSPT with a single-determinant RHF starting wave function. With an extended [5s4p2d1f] basis set we obtained the equilibrium bond distance and the harmonic vibrational frequency with a relative error of about 0.5%, these are in very good agreement with experiment. In calculations of the potential energy curve for distances larger than about 1.4 R_e the method breaks down. We analysed the effect of the individual fourth-order contributions: single, double, triple and quadruple excitations. The role of the renormalization term was stressed in the discussion of various approximations to the full fourth-order energy and in comparison with other related approaches. The basis set effect has been also examined.     

Macrophase‐separation in binary blends of symmetric polystyrene‐polybutadiene diblock copolymers

Binary blends of compositionally symmetric polystyrene‐polybutadiene diblock copolymers are investigated as a function of chain length ratio and blend composition using small‐angle neutron scattering. Three different low molar mass copolymers were blended with a high molar mass copolymer. The results are related to the theoretical phase diagram put forward by M. W. Matsen (J. Chem. Phys. 103 , 3268 (1995)). The conditions for macrophase‐separation are established, an observed asymmetry of the lamellae rich in long copolymers is discussed and the variation of the lamellar thickness with the volume fraction of short chains in the one‐phase state is compared with theoretical predictions.     

Sample preparation in matrix-assisted laser desorption/ionization mass spectrometry of whole bacterial cells and the detection of high mass (>20 kDa) proteins

Three sample preparation strategies commonly employed in matrix-assisted laser desorption/ionization mass spectrometry (MALDI-TOFMS) of whole bacterial cells were investigated for the detection of high mass signals; these included the dried droplet, the seed-layer/two-layer, and the bottom-layer methods. Different sample preparation approaches favoured the detection of high- or low-mass proteins. The low-mass peaks were best detected using the bottom-layer method. By contrast, the dried droplet method using a solvent with higher water content, and hence effecting a slower crystallization process, gave the best results for the detection of high-mass signals. Signals up to m/z 158 000 could be detected with this methodology for Bacillus sphaericus. Sodium dodecyl sulphate polyacrylamide gel electrophoresis (SDS-PAGE) analysis of the same extracts used for MALDI-TOFMS showed bands in the molecular weight range in which high-mass peaks were observed in MALDI-MS, suggesting that the high-mass signals are not polymeric adducts of low-mass protein monomers. In addition, one of the high molecular weight proteins (approximately 126 kDa) was putatively identified as an S-layer protein by an in-gel tryptic digest. The bacterial samples spotted on the target wells for MALDI-TOFMS, using the different sample preparation strategies, were examined under a scanning electron microscope and differences were observed between the different strategies, suggesting that the nature of the crystals and the distribution of the analytes amidst the crystals could influence the spectral pattern observed in MALDI-TOFMS of whole bacterial cells. Finally, evidence is presented to indicate that, although the determinants are intact cells, cell lysis occurs both before and during the MALDI process.     

Selective reductive desorption of a SAM-coated gold electrode revealed using fluorescence microscopy

The reductive desorption of a self-assembled monolayer (SAM) of a fluorescent thiol molecule (BodipyC10SH) from Au was characterized using electrochemistry and epi-fluorescence microscopy. Molecular luminescence is quenched near a metal surface, so fluorescence was only observed for molecules reductively desorbed and then separated from the electrode surface. Fluorescence imaging showed that reductive desorption was selective, with desorption occurring from different regions of the Au electrode depending on the extent of the negative potential excursion. When desorbed, the molecules were sufficiently mobile, diffusing away from the electrode surface, thereby preventing oxidative readsorption. At sufficiently negative desorption potentials, all of the thiol was desorbed from the electrode surface, resulting in fluorescence at the air/solution interface. The selective removal of the thiol monolayer from distinct regions was correlated to features on the electrode surface and was explained through potential-dependent interfacial energies. This in situ electrofluorescence microscopy technique may be useful in sensor development.     

Three-dimensional crystallographic determination of the body-centered-cubic morphologies of shear-aligned block copolymer systems

The texture of ordered phases of block copolymer melts and gels is highly sensitive to shear. In the body-centered-cubic phase of a block copolymer system [polystyrene–poly(ethylene butylene)–polystyrene] mixed with oil, we show how a given textures can be controlled with the application of a specific shear rate and amplitude. The low-amplitude shear texture is dominated by {001} planes perpendicular to the shear gradient and by the [110] axis parallel to the flow direction, that is, the {001}/[110] slip system. Detailed crystallographic studies show that both intermediate-amplitude oscillatory shear and large-amplitude oscillatory shear lead to twin structures with {112} planes sharing neighboring twins and [111] axes parallel to the shear flow. At an intermediate shear amplitude, the ve shear plane, defined by the shear flow direction (v) and shear vorticity direction (e), is parallel to the {112} twin planes. At a high shear amplitude, the orientation is rotated 90°, and this makes the ve shear plane parallel to the {110} crystallographic planes. The crystalline slip system is accordingly ({112 }/[111] + {11 2}/[111]) under intermediate-amplitude shear and ({11 0}/[111] + {1 10}/[111]) under large-amplitude shear. © 2004 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 42: 3095–3101, 2004     

Ligand Substitution of RuII–Alkylidenes to Ru(bpy)32+: Sequential Olefin Metathesis/Photoredox Catalysis

Ruthenium(II) alkylidene complexes such as the Grubbs’ 1st and 2nd generation catalysts undergo a ligand substitution with 2,2′-bipyridine, which readily leads to the common photoredox catalyst Ru(bpy)₃²⁺. The application of this catalyst transformation in sequential olefin metathesis/photoredox catalysis is demonstrated by way of ring-closing metathesis (RCM)/photoredox ATRA reactions.